Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00607 ATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAGCCTGGTAGGAAGAACAAAGCGCCGCCAGAATCACCGCAAGCTCAATCGCCCGCAACTAGAGAGAGGAGGAGGAGAGCTGAACAAGAGTTGCCGCAGGAGAATGAAGCAGCGGCAAGGACTCACGGAAGAAAGAAAAGGCGCAGTAAGCCGGGAACTGCGGCGCTTCGCGAGATTCGTCATTATCAGAAGTCTTGCCAGCTTCTTATCCCAGTCGCACCCTTTATTAGATGCGTCAAAGAGATAACGCATCAATACTCTACGGAGGTGTCTCGTTGGACACCCGAAGCTGTGTTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTGTTTGAAGACGGAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAAAAAGGATATTGAGTTGGCTCGGAGGCTTGGAGGAATAGGAAGGCCTTGGTGA 474 0.5127 MARVKHTPASRKPGRKNKAPPESPQAQSPATRERRRRAEQELPQENEAAARTHGRKKRRSKPGTAALREIRHYQKSCQLLIPVAPFIRCVKEITHQYSTEVSRWTPEAVLALQEAAEEYLVHLFEDGMLCAIHAKRVTLMKKDIELARRLGGIGRPW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00607 157 MobiDBLite consensus disorder prediction 29 52 - -
Cca11g00607 157 PANTHER HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12 15 157 - -
Cca11g00607 157 SMART h35 52 155 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca11g00607 157 Gene3D Histone, subunit A 2 153 IPR009072 GO:0046982
Cca11g00607 157 SUPERFAMILY Histone-fold 24 153 IPR009072 GO:0046982
Cca11g00607 157 MobiDBLite consensus disorder prediction 1 65 - -
Cca11g00607 157 Pfam Core histone H2A/H2B/H3/H4 29 150 IPR007125 GO:0003677
Cca11g00607 157 PANTHER HISTONE H3 15 157 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00607 Cca-Chr11 9818413 9821953 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00607 K11253 - gmx:100811872 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00607 11 9818413 9821953 Cca11g00607 11 9818413 9821953 ECH