Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00604 ATGACATTCTTCATCTCCTTTCAGTACAATACTTTCATGGATAACCTAGCACCACCTTTTTATCATCTTAATCCTTGTTTTGTTCAGAACCCACAAACCCTCATGCCACCCAGAAGCCTTTCTCCCTCTTCACTTTCTCATGGAATGTCAGATTCCCACCTGGTTTCTTCTCCTCAATTTTCCCCACCGAAATTTTCTCCATTCTTTCACCCTTTGGGTGAGATAAGGACTTTGAATTCTGTCACGGAATTGCATGCCCAGATGATCAAAATGCCGAAAAAGGGAAACTTGGCTGCAGTGGATGGAAGCATGATGAGAAACTACTTGGAATTTGGAGACTTTATGTCTGCAGCAAAGGTATTCTTTGTGGGTTTTACAAGGAATTACCTTCTGTGGAATTCTTTTCTGGAGGAGTTTGCAAGTTTTGGAGGTGACTCGCATGACATTCTGGAGGTTTTCAAGGAATTGCAGAATAAAGGAGTGGAATTTGATAGTAAAGCTCTCACTGTTGTTCTGAAAGTTTGTTTGGCCTTAATGGATTTGTGGTTTGGCATGAAAGTTCATGCTTGTTTAATTAAGAGAGGCTTCCATGTGGATGTGCACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGCTGGGGAATAGATTGGGCAAATCAAGTATTTGATGAGACCCCACTACAAGAAGATTTCCTGTGGAATACAATTGTTATGGTAAACTTGAGGAGTGAGAGGTGGGAAAATGCCTTAGAACTGTTCGGTCGAATGCAATCAGCTTCTGCCAAAGCCACTGATGGCATCATTGTCAAGCTGCTGCAAGCATGTGGGAAATTGAGAGCTTTCAATGAAGGGAAGCAGATTCATGGGTATGTTATAAGACTTGGAAGAGTGTCAAATACTTCAATTTGCAATTCTTTAGTTAGCATGTACTCTAGGAACAATAGAGTTGAACTAGCTAGAGCAGTTTTTGATTCTACAGAGGATCGTGACTTGTCATCTTGGAACTCAATAATTTCGAGTTATGCAGTCAATGGCTATTTGAATGATGCCAGGGATATCTTCCTACAAATGAAGTCTTCCAGCATCAAACCGGATATTATAACTTGGAATTCTCTTTTGTCTGGCCATCTTCTTCAGGGATCATATGAAATGGTTCTCACCAATTTCCGGAGCCTGCAACGTGCAGGCTTCAAGCCGGATTCATGTTCAATAACTAGTGCTCTGCAAGCAGTTATTGAATTGGGTTGGTTTAATTTTGGCAAAGAAATACATGGTTACATAATGAGAAGCAAGCTTGATTATGATGTCTATGTCTGTACTTCTTTGGTGGATATGTATATTAAGAATGATTGCTTAGATAAAGCTGAAGCAGTGTTCCATCATACAAAGAACAAAAACATTTGTGCTTGGAATTCATTGATATCAGGTTACACCTTCAAGGGCTTGTTTAACAATGCTGAAAAGCTATTCAACCAGATGGAGGAGGAAGGTATAAAACCTGATTTGGTGACATGGAATAGTTTGGTTTCAGGTTATTCAATGTGGGGCCGCAGTGAGGAAGCTTTGGCTGTGATCAATAGGATCAAGAGTTTGGGATATACTCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAACTACATGGATGCCCTACAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAGCCTAACTCTACTACCATTTGCAGCTTACTCGGGGCATGTGCAGGCCCGTCACTGTTAAAGAAAGGTGAAGAGATACACTGCTTCAGTATGAGACATGGGTTTGTGGATGACATATATATAGCCACTGCCCTCATTGACATGTATAGTAAGGGAGGAAAACTAGAAGTAGCTCATGAGGTTTTCAGGAACATTAAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATATGCTATTTATGGCCGTGGGGAAGAGGTGTTTACTCTATTTGAAAACATGTGCAAAACAGGTATCAGACCTGATGCTATAACCTTCACAGCTCTTCTATCTGGCTGCAAGAATTCATGTTTAGTTATGGAAGGGTGGAACTACTTTGACAGTATGAAGAAAGATTATAACATTAGTCCAACAATTGAGCACTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGTTTTCTTGATGAGGCTTTGGATTTTATCAACGCCATGCCAATAAAGGCAGATGCTAGTATTTGGGGTGCTCTTCTTGCTGCCTGTAGAATTCACAAGGATATTAAGCTAGCAGAGATTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAATTCTGCTAACTATATGCTGTTGATGAACATATATTCCATTTTCCAAAGATGGGATGACGTGGAGCGCCTTAGAGAATCGATGACTGCCATGGGGGTGAAAATTTCAAATGTCTGGAGTTGGACACAAGTTAAGCAGACTATTCACGTGTTCTCCACTGAAGGCAATCCTCATCCAGAAGAAGGAGAAATATATTTTGAGTTATATCAATTAGTTTCTGAGATAAGAAAGCTGGGATATGTTCCTGATATTAATTGTGTACATCAGAACATTGATGACAAGGATAAGGAGAAGGTTCTGCTGAGTCACACAGAGAAGTTGGCTATGACATATGGACTGATGAAAGTCAAGGATGGATCACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCACACAGCAGCAAAGTACATTTCCTTGGCTCGAAACCGTGATATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGTAATGATCGTTGGCCTTTGAGAATTTCTGGAAGGGCTCCCTTTGGGAGCATATTCAATCATGAACAAGCTTGGAAGGAGAGCGTTAGTTTCTTACAAAGAGTCCAAGAACATATTGAACTTCCTTCTGCAGTGAGAGATCAATAA 2967 0.4048 MTFFISFQYNTFMDNLAPPFYHLNPCFVQNPQTLMPPRSLSPSSLSHGMSDSHLVSSPQFSPPKFSPFFHPLGEIRTLNSVTELHAQMIKMPKKGNLAAVDGSMMRNYLEFGDFMSAAKVFFVGFTRNYLLWNSFLEEFASFGGDSHDILEVFKELQNKGVEFDSKALTVVLKVCLALMDLWFGMKVHACLIKRGFHVDVHLSCALINLYEKCWGIDWANQVFDETPLQEDFLWNTIVMVNLRSERWENALELFGRMQSASAKATDGIIVKLLQACGKLRAFNEGKQIHGYVIRLGRVSNTSICNSLVSMYSRNNRVELARAVFDSTEDRDLSSWNSIISSYAVNGYLNDARDIFLQMKSSSIKPDIITWNSLLSGHLLQGSYEMVLTNFRSLQRAGFKPDSCSITSALQAVIELGWFNFGKEIHGYIMRSKLDYDVYVCTSLVDMYIKNDCLDKAEAVFHHTKNKNICAWNSLISGYTFKGLFNNAEKLFNQMEEEGIKPDLVTWNSLVSGYSMWGRSEEALAVINRIKSLGYTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICSLLGACAGPSLLKKGEEIHCFSMRHGFVDDIYIATALIDMYSKGGKLEVAHEVFRNIKEKTLPCWNCMMMGYAIYGRGEEVFTLFENMCKTGIRPDAITFTALLSGCKNSCLVMEGWNYFDSMKKDYNISPTIEHYSCMVDLLGKAGFLDEALDFINAMPIKADASIWGALLAACRIHKDIKLAEIAARNLFRLEPYNSANYMLLMNIYSIFQRWDDVERLRESMTAMGVKISNVWSWTQVKQTIHVFSTEGNPHPEEGEIYFELYQLVSEIRKLGYVPDINCVHQNIDDKDKEKVLLSHTEKLAMTYGLMKVKDGSPIRVVKNTRICQDCHTAAKYISLARNRDIFLRDGGRFHHFMNGECSCNDRWPLRISGRAPFGSIFNHEQAWKESVSFLQRVQEHIELPSAVRDQ 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00604 988 Gene3D Tetratricopeptide repeat domain 140 281 IPR011990 GO:0005515
Cca11g00604 988 Gene3D Tetratricopeptide repeat domain 465 594 IPR011990 GO:0005515
Cca11g00604 988 Pfam E motif 755 809 IPR046848 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 470 502 IPR002885 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 504 538 IPR002885 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 641 674 IPR002885 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 539 572 IPR002885 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Cca11g00604 988 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cca11g00604 988 Pfam PPR repeat family 536 584 IPR002885 -
Cca11g00604 988 Pfam PPR repeat family 331 376 IPR002885 -
Cca11g00604 988 Pfam PPR repeat family 641 684 IPR002885 -
Cca11g00604 988 Pfam PPR repeat family 466 513 IPR002885 -
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Cca11g00604 988 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 228 934 - -
Cca11g00604 988 Pfam DYW family of nucleic acid deaminases 853 945 IPR032867 GO:0008270
Cca11g00604 988 Gene3D Tetratricopeptide repeat domain 595 689 IPR011990 GO:0005515
Cca11g00604 988 Gene3D Tetratricopeptide repeat domain 283 419 IPR011990 GO:0005515
Cca11g00604 988 Gene3D Tetratricopeptide repeat domain 690 771 IPR011990 GO:0005515
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Cca11g00604 988 Pfam PPR repeat 712 736 IPR002885 -
Cca11g00604 988 Pfam PPR repeat 233 259 IPR002885 -
Cca11g00604 988 Pfam PPR repeat 303 326 IPR002885 -
Cca11g00604 988 Pfam PPR repeat 612 637 IPR002885 -
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Cca11g00604 988 PANTHER OS05G0586900 PROTEIN 143 224 - -
Cca11g00604 988 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 143 224 - -
Cca11g00604 988 PANTHER OS05G0586900 PROTEIN 228 934 - -
Cca11g00604 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00604 Cca-Chr11 9795680 9802415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00604 143 945 Glycoside Hydrolase AT3G49170 30.598 5.80e-130 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00604 - - gmx:100796795 1675.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00604 11 9795680 9802415 Cca11g00604 11 9795680 9802415 ECH