Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00602 aTGAACGGTGGTGAATTACACGGTGCTATTGAGATGCAGTACATAAGGAGGCATCACAGACATGAACCGAGGGAGAACCAGTGCACCTCTGCACTTGTCAAACACATAAGAGCTCCTGTTCACCTTGTGTGGTCGCTGGTTAGAAGATTTGATCAACCCCAGAAATATAAACCATTTGTCAGCAGGTGTATCATGCAAGGGGACCTTGGCATTGGAAGCGTTAGAGAAGTCAATGTTAAATCTGGCCTTCCAGCCACAACAAGTACTGAGAGGTTGGAGCAATTTGATGATGAGGAACACATTCTTGGTATCAGGATTGTTGGAGGTGACCATAGGCTGAGGAACTATTCTTCCATAATCACGGTCCATCCAGAGGTCATTGACGGGAGACCTGGCACAATGGTGATTGAATCATTTGTGGTAGATGTGCCTGATGGGAACACCAGGGATGAAACTTGTTACTTTGTGGAGGCTTTGATCAGGTGTAACCTAAGCTCTTTGGCTGATGTCTCTGAGAGGATGGCCGTGCAGGGTCGAACCGATCCCATCAACCATTAA 558 0.4677 MNGGELHGAIEMQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCIMQGDLGIGSVREVNVKSGLPATTSTERLEQFDDEEHILGIRIVGGDHRLRNYSSIITVHPEVIDGRPGTMVIESFVVDVPDGNTRDETCYFVEALIRCNLSSLADVSERMAVQGRTDPINH 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00602 185 CDD PYR_PYL_RCAR_like 28 172 - -
Cca11g00602 185 Gene3D - 3 181 IPR023393 -
Cca11g00602 185 Pfam Polyketide cyclase / dehydrase and lipid transport 33 172 IPR019587 -
Cca11g00602 185 SUPERFAMILY Bet v1-like 28 169 - -
Cca11g00602 185 PANTHER - 6 182 - -
Cca11g00602 185 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 6 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00602 Cca-Chr11 9767823 9771954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00602 K14496 - gmx:100500065 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00602 11 9767823 9771954 Cca11g00602 11 9767823 9771954 ECH