Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00579 ATGGCACCAAGAAACACTCGCGGAAAGCCCAAGGGAGACAAGAAAAAGAAGGAAGAAAAAGTTCTTCCTGTTGTCATAGATATCACTGTGAAGCTCCTCGATGAAACTCATGTTCTCAAGGGAATATCAACAGACAGAATAATAGATGTTCGTCGGCTTTTATCGGTGAATATGGAGACGTGTTATATCACAAATTTTTCCCTGTCGCATGAGGTAAGAGGGCCCCGTCTGAAGGACACGGTGGACGTGTCCGCACTGAAGCCCTGCGTCCTCACTTTAATTGAAGAGGATTACGATGAAGAGCAAGCAGTGGCGCACGTGCGAAGACTCCTCGACATCGTCGCCTGCACCACGAGCTTCGGTCCGTCGTCGCCGCCGACGCCGAAGTGTGCGGCCGGAACCGACCCAAAGTCCGGGAAGTCTGAAGCGCCGCCGGCGAAGCAATCGGCGAAAGATGCAGCGGCGGCGGATTTGGACGGCGAGATAAGCCACTCGTGCCCTAAGCTGGAGAGTTTCTACGAGTTTTTCTCTCTCGCACACCTCACTGCGCCTATCCAGTATGTGAAGAAGAGTTCGAGGCGGCGCGTGGAGGAGATATCGGAGGCAGATTACCTGTTCTCGCTGGATGTGAAGGTGTGTAACGGGAGAGTGGTGCACGTTGAAGCTTGCAGAAAGGGGTTTTACAGCGTTGGGAAGCAGCGGATTCTGTGCCATAATCTGGTTGATTTGTTGAGACAGCTTAGCAGGGCCTTTGATAAGGCTTTCGATGATCTCTTGAAGGCATTTTCAGACCGAAACAAGTTTGGGAATCTTCCATATGGATTCAGAGCCAACACGTGGCTTGTTCCTCCTGTTGCAGCACAATCACCCTTATCTTTTCCTCCTCTTCCCGTGGAGGATGAAACATGGGGAGGGAATGGTGGCGGTCTTGGAAGAGATGGAAAGTATGATTTGATTCCTTGGGCCAATGAGTTTTCATATATTGCGTCTATGCCTTGCAAGACAGCAGAAGAAAGACAAATTCGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTTGATGTTGCAATTTTCAGAGCAATAAGGGCCGTTAAACATGTTATGGAAGAGCCCAATTTTAGCTTCTCAGTTGTAGAAAATAATGTTATTTACACTGAGAGAGTAGGTGATTTGAGTATCAACGTCTTGAAAGATGGTTCTGTTGCAAGCTGTAAGATGGATACTAAAATTGATGGAGTTGAAGCTACTGGAGTAAATCAAGAGGACCTACTAGAACGAAATCTACTGAAAGGAATCACTGCTGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTCATTAATGTAAGATATTGCGGTTATGTGGTTGTTGTGAAAGTTGAGGGCAGAGTTAATGAAAGAGTTGACTCTCCATCTCAACAAAATATTGAGTTGTTTGATCAGCCAGAGGGTGGTGCCAATGCTCTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACTCCATCAGAAAACAATAAACCAATGACTCAGATACAAACGTGTGGGAATGAAGAGCTTGGCGCTTCACATGCTTTTGTGGAGAAGCTGATTAAAGAAGGTATTGCCAAGCTTGAGAAAGAAGAACCAGGTATGGACTATTTTGTAAGATGGGAACTTGGAGCCTGCTGGATACAACATTTGCAAGACCAAAATAATACAGAAAAAGATAAGAAGCCATCTTTGGAGAAGGCTAAGAATGAAATGAAGGTCGAGGGTCTTGGGAAACCCCTTAAAGCCCTGAAGAATTTTAAAAAGAAGTCTGATTCAAGCAATACAAATTATGCATCTGAATATTCAAAATTTAATCGGGAGGCTGAAAGCCCTCCGTTGCCCTCCCTTGAATCCCAACATGAAACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAAGGATGTTATCTGAGGAAGCTTTTAACCGATTAAAAGAATCAGGAACTGGACTTCACTGCAAGTCTATGCATGATTTGATCGAGTTATCTCGAAAATATTACACAGATGTTGCTCTCCCAAAATTGGTAGCAGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTAGGGGTCTACAAATGCGTTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACATGTGCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTTAAGCACATCCTGCGGGCAGTAATTTCTGCTGTTGACATGGACAAAATGGCTTTATCAATTGCTGGTGCATTGAATGTGCTGCTTGGTGTTCCTGAAAATAGAGAATCAGATAAATCACATGAAGTTCACCCCTTGGTGTGGAAATGGCTAGAGTTATTTCTGAAGAAGCGGTTTGATTGGGATATTAACAAGTTGAATTACAAAGATGTGAGGAAATTTGCAATTTTACGTGGATTGTGTCACAAGGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCTCCAATTCCCTTCCGCAAATTTGATATTGTCAGCTTGGTGCCTGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCCTAGAGTCATCCAAAACCGCTTTAGACAAGGGAAAGCTTGAGGACGCAGTTACCTATGGCACAAAGGCTCTTGCTAAGCTGGTAGCAGTTTGTGGTCCCTACCATCGGATGACAGCGGGAGCATATAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATTTATCAACAAAAAGCTTTGGATATCAACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTAGCTGTTTTCTACTACAGACTTCAACACACAGAGCTGGCTCTGAAATATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACTGCTGCCACTTACATTAATGTGGCTATGATGGAAGAAGGCCTGGGAAATGTGCATGTTGCTCTCAGATATCTTCACAAAGCTTTAAAGTGTAACCAAAGATTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCTATAGCACTCTCATTGATGGAAGCATATCCATTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTCTGCGGGCAAAACTTGGCCCCGATGACTTGCGCACACAGGATGCTGCAGCATGGCTTGAATATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTAGAAAACCTGATGCATCAATAGCTAGTAAAGGCCATCTAAGTGTGTCAGATTTGCTTGACTACATTAATCCTAATCATGATACTAAAGGGAGAGATGCAGCTGCAAAGAGAAGAACCCAGATAACAAAGGTGAGAGCAACATCCTATCAGAACATTGGCATGTCAAGTTCTGATGAGTCTTCAAAAGAAATTCCAAAAGAGGCTTCAGATGAAGAGGTACAATTACATGTACCAGTAGGTAGTGCAGATTCTGAGCAGGAAAGCAACTCCAGACCTGATTTGGAACATACTATTTCAAAACAAATATCAGATGAAAAGCCACAAATTTATGATGAAATCTTGTCTGAAGCACATGCTGAAGGAGAGGATGGATGGCAACCAGTTCAAAGACCAAGATCAGCTGGCTCATATGGCCGAAGACTGAAGCAGAGACGGGCAACACTTGGCAAAATTTATAGTTATCAAAAGAATGTGGAAGTTGGCACAGAATCTCCTTTTGTTAGGAGTGCTAATCCAAATAGTAGGTATTATTTCTTGAAGAAACGGACAATTTCCCATGGGGTTAATACAGATGATCATACTGTAAACATCACCCAAGGCAGTAAATTTGGAAGGAAAGTAGTCAAAGCTGTTACATACAGGGTCAAGTCCGTGCCCTCAACTTCCAAGACTAGTGCAAATGAGATGTCAGAAAATGGTGACAAGCTGTTCAGTTCTCTTTCAGAACCTGATCCAATTGACATTAATCCAGTTAAGAGTTCTATAGTTAGTCTTGGAAAGTCTCCTTCATACAAAGAAGTGGCCTTAGCTCCTCCAGGGACAATCTCCAAAATGCAGGTCTACAATCCTGAGATTTCTGTTAGCTGTGAACATGATGGTGGCAAACATGAAGAGGAAGATATTGAAGCTAATGGAAATGTTAATGTTGATCCAACCCCGACAGAGGTAAATGATATGGTTAAAGAGCAGAATAATGATTCTTTATCAGATTCTGTAGATGATTCACAGGATGATACTGGAGTTGCTACTGAGGGGAAAGAGGAAACTCAATTGATGGTTACTGAGCAAGATAATTGTATGAGTGCTGAGGGGCATGTTGAGGCTCAAGTAGCAGTTGATAGCAGCATTTTGATTCATGCAGTACATGATCATGTGGATTCTTACAAACAAGAACTTGATGCAAGTAATTCGTCTGGCAGTTTAGAATCTAGTGATAATACAAATCCCATTTCCCAGGTTGGTGAGGACTTAAGGGTCAATGTATCACCATCAAGTCAGAGTCATGCCGGGGGCATCCCGTATAAAAAGTTGTCCGCATCTGCAGCTCCATTCAACCCATCACCTGCCATTGCACGTGCACCAATTGCCATGAATATGACTCTTCCTTCTGGGCCTAGTGCAATTCCTGCAATTGGGCCCTGGCCAGTAAACATGAATGTCCATCCTGGACCTACTACTGTGCTACCTGCAGTTACCCAGATGTGCTCCTCTCCTCACCATGCATATCCATCACCTCCACCAACACCAAACATGATGCAACCATTGCCATTTATGTATCCTCCTTATACTCAAGCTCAATCAATACCACCTAGCAACTTTCCAGTCACTAGCAGTGCCTTTCATGCCAATCATTTTACATGGCAATGTAATTTGAACCCCACAATATCTAAATTTGGTCCCAGTGCTGTTTGGCCTGGTTGTCATCCAGTGGAATTTCCCCATCCGGTGCCTATTGTTGAACCAATCCCTGATCCCATTTCAGAGTCACAAGTTCTGTGTCATGGTCCTGAAAGTCCAAGTTCAGCTTCAGTTCTGCCTGAGGACATTGATAATGTTGAGGATTCCAATAAAGTGGTAAAAACTTTAGCGTCAGAGATAAGTGAAGATGAAGCAGCAAGAGCTGGTTCAGAAAGTATAAAAGAAAATGGTAATATGAATTTTCAAGGGACTGAAAATGCTGGGAACAAGCAAAATCAAAACATTGGTTCAAATGACAACTCTAGCAGTAGTGAAACAAACATGGATGGCGAGAAAACCTTCAGCATTTTGATTCGAGGAAGAAGAAATCGAAAGCAGACTCTGAGAATGCCAATAAGTTTGCTGACTCGACCTAATGGCTCACAGTCATTCAAGGTTATCCATAACCGTGTAGTTAGAGGAAGTCATGCTCCCAAGTCTATCAATTTCTCTTCTGGTAAAGATTGTACAGCTACTGCTTAA 5526 0.43 MAPRNTRGKPKGDKKKKEEKVLPVVIDITVKLLDETHVLKGISTDRIIDVRRLLSVNMETCYITNFSLSHEVRGPRLKDTVDVSALKPCVLTLIEEDYDEEQAVAHVRRLLDIVACTTSFGPSSPPTPKCAAGTDPKSGKSEAPPAKQSAKDAAAADLDGEISHSCPKLESFYEFFSLAHLTAPIQYVKKSSRRRVEEISEADYLFSLDVKVCNGRVVHVEACRKGFYSVGKQRILCHNLVDLLRQLSRAFDKAFDDLLKAFSDRNKFGNLPYGFRANTWLVPPVAAQSPLSFPPLPVEDETWGGNGGGLGRDGKYDLIPWANEFSYIASMPCKTAEERQIRDRKAFLLHSLFVDVAIFRAIRAVKHVMEEPNFSFSVVENNVIYTERVGDLSINVLKDGSVASCKMDTKIDGVEATGVNQEDLLERNLLKGITADENTAAHDITTLGVINVRYCGYVVVVKVEGRVNERVDSPSQQNIELFDQPEGGANALNINSLRLLLHNTTPSENNKPMTQIQTCGNEELGASHAFVEKLIKEGIAKLEKEEPGMDYFVRWELGACWIQHLQDQNNTEKDKKPSLEKAKNEMKVEGLGKPLKALKNFKKKSDSSNTNYASEYSKFNREAESPPLPSLESQHETTEAENELVLKRMLSEEAFNRLKESGTGLHCKSMHDLIELSRKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVDMDKMALSIAGALNVLLGVPENRESDKSHEVHPLVWKWLELFLKKRFDWDINKLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSPIPFRKFDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDTKGRDAAAKRRTQITKVRATSYQNIGMSSSDESSKEIPKEASDEEVQLHVPVGSADSEQESNSRPDLEHTISKQISDEKPQIYDEILSEAHAEGEDGWQPVQRPRSAGSYGRRLKQRRATLGKIYSYQKNVEVGTESPFVRSANPNSRYYFLKKRTISHGVNTDDHTVNITQGSKFGRKVVKAVTYRVKSVPSTSKTSANEMSENGDKLFSSLSEPDPIDINPVKSSIVSLGKSPSYKEVALAPPGTISKMQVYNPEISVSCEHDGGKHEEEDIEANGNVNVDPTPTEVNDMVKEQNNDSLSDSVDDSQDDTGVATEGKEETQLMVTEQDNCMSAEGHVEAQVAVDSSILIHAVHDHVDSYKQELDASNSSGSLESSDNTNPISQVGEDLRVNVSPSSQSHAGGIPYKKLSASAAPFNPSPAIARAPIAMNMTLPSGPSAIPAIGPWPVNMNVHPGPTTVLPAVTQMCSSPHHAYPSPPPTPNMMQPLPFMYPPYTQAQSIPPSNFPVTSSAFHANHFTWQCNLNPTISKFGPSAVWPGCHPVEFPHPVPIVEPIPDPISESQVLCHGPESPSSASVLPEDIDNVEDSNKVVKTLASEISEDEAARAGSESIKENGNMNFQGTENAGNKQNQNIGSNDNSSSSETNMDGEKTFSILIRGRRNRKQTLRMPISLLTRPNGSQSFKVIHNRVVRGSHAPKSINFSSGKDCTATA 1841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00579 1841 MobiDBLite consensus disorder prediction 604 618 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1147 1161 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1222 1241 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 120 154 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1392 1450 - -
Cca11g00579 1841 Coils Coil 562 582 - -
Cca11g00579 1841 CDD CLU-central 700 840 IPR033646 -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1409 1440 - -
Cca11g00579 1841 Pfam Mitochondrial function, CLU-N-term 44 114 IPR028275 -
Cca11g00579 1841 Pfam Translation initiation factor eIF3 subunit 135 698 839 IPR033646 -
Cca11g00579 1841 SUPERFAMILY Hypothetical protein c14orf129, hspc210 181 261 IPR023231 -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1491 1513 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1147 1207 - -
Cca11g00579 1841 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1823 IPR027523 GO:0006996
Cca11g00579 1841 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1823 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1729 1777 - -
Cca11g00579 1841 Gene3D Tetratricopeptide repeat domain 983 1100 IPR011990 GO:0005515
Cca11g00579 1841 ProSiteProfiles TPR repeat profile. 910 943 IPR019734 GO:0005515
Cca11g00579 1841 SMART tpr_5 910 943 IPR019734 GO:0005515
Cca11g00579 1841 SMART tpr_5 952 985 IPR019734 GO:0005515
Cca11g00579 1841 SMART tpr_5 994 1027 IPR019734 GO:0005515
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1190 1207 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1493 1513 - -
Cca11g00579 1841 MobiDBLite consensus disorder prediction 599 638 - -
Cca11g00579 1841 SUPERFAMILY TPR-like 876 981 IPR011990 GO:0005515
Cca11g00579 1841 MobiDBLite consensus disorder prediction 1741 1777 - -
Cca11g00579 1841 ProSiteProfiles Clueless (Clu) domain profile. 299 576 IPR025697 -
Cca11g00579 1841 Pfam Tetratricopeptide repeat 909 979 - -
Cca11g00579 1841 Pfam Tetratricopeptide repeat 993 1067 - -
Cca11g00579 1841 SUPERFAMILY TPR-like 947 1074 IPR011990 GO:0005515
Cca11g00579 1841 Gene3D Tetratricopeptide repeat domain 870 982 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00579 Cca-Chr11 9134789 9159807 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00579 K03255 - gmx:100808136 3165.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00579 11 9134789 9159807 Cca11g00579 11 9134789 9159807 ECH