Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00576 ATGGAGAATCTGATACAGTTGGTGAACAAAATCCAGAGAGCGTGCACCGCACTCGGCGATCACGGCGAGGAAAGCGCCTTGCCTACTCTCTGGGACGCCCTTCCCTCCATCGCCGTTGTCGGAGGACAGAGCTCTGGGAAGTCTTCAGTGTTGGAGAGTGTTGTCGGAAAGGACTTTTTACCCCGTGGATCTGGGATTGTTACTCGGCGTCCTCTTGTTTTGCAACTTCATAGGCTTGATGAAGGGAGAGAATACGCTGAATTTATGCACCTTCCAAGGAAGAAATTTACTGATTTTGCTGCTGTTAGGCAGGAGATCGCTGACGAGACTGACAGAGAAACAGGTCGCTCCAAGGGTATTTCATCGGTTCCCATCCATCTGAGTATCTACTCCCCTCATGTTGTCAATCTGACATTGGTTGATCTTCCGGGACTTACTAAAGTCGCTGTTGAGGGTCAACCAGATAGCATTGTGCAAGACATTGAAAACATGGTTCGATCATTTATTGAAAAGCCGAATTGCATCATTTTGGCAATATCTCCTGCCAACCAAGATCTAGCTACCTCTGATGCAATTAAAATTTCTCGTGAAGTAGATCCTAAAGGGGAAAGAACATTCGGAGTTTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCAGCTGAGATCCTTGAAGGGAAATCATATAAGCTCAATTATCCTTGGATTGGTGTTGTTAACCGCTCCCAAGCTGATATCAATAAACAAGTTGATATGATTGCTGCTCGGAAAAGAGAGACCGAGTATTTTGCTAATAGCCCAGAATATAGACATCTTGCTTCCAGAATGGGCTCTGTGCATCTTGGAAAAGTGCTATCTAAGCATTTGGAAACTGTCATCAAGTCTCGGATCCCAGGCCTACAATCACTCATTAACAAGACTATCATTGAATTGGAGACAGAATTAAACCGTATTGGGAAACCTATTGCTGCTGATACTGGTGGGAAGTTGTACATGATAATGGAAATCTGTCGAACTTTTGATCAAGCATTTAAAGATCATCTTGATGGCATACGGCCTGGTGGTGAGAAAATTTACCAAGTATTTGATAATCAATTTCCGGCATCTTTAAAACGGTTGCAGTTTGACAAACATTTATCGATGGATAATGTGCGGAAACTAATAACTGAAGCAGATGGGTATCAACCTCATCTCATTGCTCCTGAGCAAGGATACCGTCGTCTTATTGAATCTTGCTTGGTATTAATTAGGGGCCCTGCTGAAGCAGCTGTTGATGCGGTTCATGGAATTTTGAAGGATTTGATTCATAAATCTATGAGCGAGACATTGGAATTAAAGCAGTATCCCACTTTGAAGGTAGAACTGGGAAGTGCAGCTGTTGATTCATTGGAGAGAATGAGAGAAGAAAGTAAGAAAGCAACTTTGCTTTTGGTGGACATGGAGTATGGCTATTTGACTGTTGAATTTTTCCGCAAACTTCCCCAAGACGCAGAGAAGGGTGGAAATCCAACTCATTCACTTTTCGACAGATATAATGATGCTTATCTTCGTCGAATTGCTACGACTGTCTTGTCCTATGTGAACATGGTATGTGGGACCCTGAGGCATACTATTCCCAAGTCCGTAGTTTATTGTCAAGTGCGTGAGGCTAAGCGCAGCTTACTGGATCACTTCTTTACAGAATTGGGGAAAAAGGAGGGAAAACAACTAGCTTCACTACTGAATGAGGACCCGGCAATCATGCAGCGCCGCACCTCCCTCTCAAGGAGGCTCGAGCTATACAGAAGTGCACAATCAGAAATTGAGGCAGTTGCATGGGAAAGGTAG 1830 0.4372 MENLIQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHRLDEGREYAEFMHLPRKKFTDFAAVRQEIADETDRETGRSKGISSVPIHLSIYSPHVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKIDLMDKGTDAAEILEGKSYKLNYPWIGVVNRSQADINKQVDMIAARKRETEYFANSPEYRHLASRMGSVHLGKVLSKHLETVIKSRIPGLQSLINKTIIELETELNRIGKPIAADTGGKLYMIMEICRTFDQAFKDHLDGIRPGGEKIYQVFDNQFPASLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVLIRGPAEAAVDAVHGILKDLIHKSMSETLELKQYPTLKVELGSAAVDSLERMREESKKATLLLVDMEYGYLTVEFFRKLPQDAEKGGNPTHSLFDRYNDAYLRRIATTVLSYVNMVCGTLRHTIPKSVVYCQVREAKRSLLDHFFTELGKKEGKQLASLLNEDPAIMQRRTSLSRRLELYRSAQSEIEAVAWER 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00576 609 SMART dynamin_3 1 250 IPR001401 GO:0003924|GO:0005525
Cca11g00576 609 CDD DLP_1 34 299 IPR001401 GO:0003924|GO:0005525
Cca11g00576 609 Pfam Dynamin GTPase effector domain 513 605 IPR003130 GO:0003924|GO:0005525
Cca11g00576 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 307 IPR027417 -
Cca11g00576 609 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 299 IPR030381 GO:0005525
Cca11g00576 609 Gene3D Dynamin, middle domain 330 585 - -
Cca11g00576 609 Pfam Dynamin family 37 212 IPR045063 -
Cca11g00576 609 Gene3D - 1 308 IPR027417 -
Cca11g00576 609 Pfam Dynamin central region 220 487 IPR000375 -
Cca11g00576 609 PRINTS Dynamin signature 34 52 IPR022812 -
Cca11g00576 609 PRINTS Dynamin signature 59 76 IPR022812 -
Cca11g00576 609 PRINTS Dynamin signature 131 148 IPR022812 -
Cca11g00576 609 PRINTS Dynamin signature 181 199 IPR022812 -
Cca11g00576 609 PRINTS Dynamin signature 200 216 IPR022812 -
Cca11g00576 609 PRINTS Dynamin signature 223 242 IPR022812 -
Cca11g00576 609 SMART GED_2 512 605 IPR003130 GO:0003924|GO:0005525
Cca11g00576 609 ProSiteProfiles GED domain profile. 517 609 IPR020850 -
Cca11g00576 609 PANTHER DYNAMIN-RELATED PROTEIN 1B 2 608 - -
Cca11g00576 609 PANTHER DYNAMIN 2 608 IPR022812 -
Cca11g00576 609 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00576 Cca-Chr11 9111877 9118429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00576 - - gmx:100793097 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00576 11 9111877 9118429 Cca11g00576 11 9111877 9118429 ECH