Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00563 ATGCAGCCCTTCGGCGTTCACCTCGCCGGCGACGGAAAGAACCCGCCGCCGCCGAAGCGGACCGTGAAGAAGACGCTAGTTGTAGAAGAGTCCTCCCTGGACAACCCGGATCTGGGCCCGTTTCTTCTCAAGATGGCCCGCGAAACGATTGCGTCGGGGGAAAGCCCGGTAAGGGCCCTGGACTTCGCCATTCGGGCCTCGAAGTCGTTCGAGCGGTGTGCGGGCCCGGGCCTGGAACTCGCCACGTGTCTCCACGTGGTTGCTGCGATCCACAGCAGTTTGGGGCGGTTGGACGAGGCCGTTGAGGCCCTGGAGCGCTCCATTTTGCTTTTGGAAGGCGAAACCGGGTCGGGTCAGGCCATGGCCCAGTTTTCCGGGTACATGCAACTTGGAGACACTTGTTCCATGATTGGACAGTTGGATAGGTCCATTTCGTGTTACGAGTCGGGTCTGAAGATCCAAATGGACGTTCTGGGTGAATCCGACCCGAGAGTTGCTGAAACTTGTAGGTACCTAGCTGAAGCTCATGTTCAAGCCATGCAATTCGATCAGGCAGAGAAATTCTGCAAAAAGACCCTAGAAATTCACAGGGAGCATTGCTCTCCTGCTTCCCTCACCGAAGCAGCCGACAGGCGTCTAATGGCCCTTATATTCGAGGCCAAGGGAGATTTTGAACCAGCACTTGAGCAACTTGTCCTAGCTAGCATGTCAATGATCGCCAATGCACAAGACAATGAGGTTGCAGCTATTGATGTTAGCATTGGGGACATCTACTTGTCACTATGCCGTTTTGATGAGGCTGTTTTTGCCTATCAGAAAGCTCTAACAGTGTTCAAATCCACCAAAGGTGAAAGCCACAGTTCTGTGGCATTAGTGTACATTCGCCTCGCAGATCTTTACTACAGGACAGGGAAATTAAGAGAGTCAAAATCCTATTGTGAAAATGCCTTGAGAATATACAGTAAGCCGGCGGCTGGAACAACCGCCGGTGAGATTGCGAGCGGCTTGACTGAAATCTCTTCCATCTATGAGGCTCTAAATGAGCCAGAGGAAGCGCTGAAGCTGTTGCAGAAGGCGGTGAAGTTGTTGGAGGATATCCCTGGACAATATAGGACAGTTGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAGGTATATGGATGCTTGGAAGTCTTTTGAGAATGCTATCACCAAGCTGAGAGCAAGTGGGGAGAGTAAATCTGCCTTTTTTGGAGTTGTATTGAACCAGATGGGGCTGGCATGCGTGCAACTGTATAAAATAGGGGACGCTGCCAAACATTTTGAAGAAGCAAGAGAGATATTGGAGAGAGAGTATGGAACATATCATTCTGACACTCTTGGGGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGAAGCCATTGAGATATTGGAATACATACTAAAGATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAAGAAAAGGCTATTTGAGCTTTTGAAAGAAGCAGGAAGAGTTCGGAATAGAAAGGGAAAATCGCTTGAAAACCTTATAGATTCCAACTCCTTAAAGATGAAGAAGGAAGGAAAAAGTAGATGGTCTGCTTTTGGTTTGAGAACTTGA 1653 0.4882 MQPFGVHLAGDGKNPPPPKRTVKKTLVVEESSLDNPDLGPFLLKMARETIASGESPVRALDFAIRASKSFERCAGPGLELATCLHVVAAIHSSLGRLDEAVEALERSILLLEGETGSGQAMAQFSGYMQLGDTCSMIGQLDRSISCYESGLKIQMDVLGESDPRVAETCRYLAEAHVQAMQFDQAEKFCKKTLEIHREHCSPASLTEAADRRLMALIFEAKGDFEPALEQLVLASMSMIANAQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVYIRLADLYYRTGKLRESKSYCENALRIYSKPAAGTTAGEIASGLTEISSIYEALNEPEEALKLLQKAVKLLEDIPGQYRTVAGIEAQMGVMFYMVGRYMDAWKSFENAITKLRASGESKSAFFGVVLNQMGLACVQLYKIGDAAKHFEEAREILEREYGTYHSDTLGVYSNLAATYDAMGRVEEAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRKGKSLENLIDSNSLKMKKEGKSRWSAFGLRT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00563 550 SUPERFAMILY TPR-like 129 488 IPR011990 GO:0005515
Cca11g00563 550 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g00563 550 Gene3D Tetratricopeptide repeat domain 234 417 IPR011990 GO:0005515
Cca11g00563 550 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Cca11g00563 550 Pfam Tetratricopeptide repeat 336 362 IPR019734 GO:0005515
Cca11g00563 550 Pfam MalT-like TPR region 86 231 IPR041617 -
Cca11g00563 550 ProSiteProfiles TPR repeat profile. 333 366 IPR019734 GO:0005515
Cca11g00563 550 Pfam Tetratricopeptide repeat 247 321 - -
Cca11g00563 550 Pfam Tetratricopeptide repeat 418 490 - -
Cca11g00563 550 Gene3D Tetratricopeptide repeat domain 418 539 IPR011990 GO:0005515
Cca11g00563 550 SUPERFAMILY TPR-like 219 321 IPR011990 GO:0005515
Cca11g00563 550 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Cca11g00563 550 Gene3D Tetratricopeptide repeat domain 44 233 IPR011990 GO:0005515
Cca11g00563 550 SMART tpr_5 166 199 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 124 157 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 374 407 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 81 114 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 416 449 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 290 323 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 458 491 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 248 281 IPR019734 GO:0005515
Cca11g00563 550 SMART tpr_5 333 366 IPR019734 GO:0005515
Cca11g00563 550 Coils Coil 94 114 - -
Cca11g00563 550 SUPERFAMILY TPR-like 378 510 IPR011990 GO:0005515
Cca11g00563 550 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 24 550 - -
Cca11g00563 550 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 24 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00563 Cca-Chr11 8796546 8801288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00563 87 293 Glycosyltransferase AT3G04240 23.394 6.83e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00563 - - gmx:100794697 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00563 11 8796546 8801288 Cca11g00563 11 8796546 8801288 ECH