Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00561 ATGGCCAACTCAATCACCTTGTTTATGCTGTGGTTGAGTGTAATATCTACTGTCCACCATGTGAAGCTTATAGCACATGGAAGTACTGGGGGAGAATCAACCAGGTTCTATGATTTCAAGGTTCAAACTAAAAGAGTTACCAAACTTTGCAACTCCAAAGACATTGTTACGATCAATGGTATGTTTCCAGGACCTGTTGTTTATGCCCAAGAGGATGATAGAATCATAGTAAAAGTGACCAATAAGACACCTTTCAATGTTACAATTCACTGGCATGGAGTCCGGCAAAGGCTATCATGCTGGTATGATGGAGCATCCACGATTACACAATGTCCAATTCAATCAGGCCAAAGTTTCACCTATAATTTTTCAGTGGTGCAGCAGAAGGGCACCTTCTTTTGGCATGCTCATGTTTCTTGGTTACGAGGAACGGTTTATGGTGCCATGATTGTTTATCCAAAGACCGGGGTACCTTACCCATTTAAGTTCCCTTATCAAGAGCACATAATCATACTAGGGGAGTATTGGATGAAGGATCTCCAAAAAATTGAGTATGACACTCTAGCAAGTGGAGGACCTCCTCCTATAGCAGATGCATATACCATCAACGGTCATCCAGGACCCAACTACAACTGCTCCACTAATGATTTCCACCAAGTTGATGTGATTCCCGGGAAAACCTATTTGTTAAGACTGATTAATGCGGGTTTGAACACTGAGAACTTCTTTGCCATTGCTGATCACAAATTAACAATAGTGGAAGCTGATGCTGAATACACAAAACCATTCACCACAGACACAGTGATGATTGGACCAGGTCAAACACTGAATGTCCTTGTCTCTGCTGATAAGCCAGTAGGAAAATACTCCATGGCTGCAGCACCTTACAAGTCTGGAAGGTTTGTCCTATATCAAAACGTTTCGGCTATAGCCTTCTTTAACTATATAGGGGCTCCATCTAATAGCTTATATACACCAGCTAAATTGCCTAAACTTGATGATAAACTCGTTGTTAAGACAGTCATGGATGGGTTAAGGAGCCTAAATCAAGTCAATGTTTTTAGAGAAATTGATGAAAATCTATTCATTACCATTGGATTGAATGTTCAAAAGTGTCACTCAAAGACACCAAAGCAAAATTGCCAAGCCCAAGATGGGGTGTTGGCAGCTTCAATGAACAATATAAGTTTTGTTAATCCCAATATTTCAATCCTGGAAGCATATTATAAGAAGATAAAAGGAATATATACTGAAGATTTCCCAGACATGCCCCCGAAGTTCTATGACTTTGTTAATGGTGCCCCTAACAATATTACGTACGACACGCAGTCATTGAATGGTACTAAAACAAAGGTCCTTAAATATGGTAGCAAGGTGCAACTAATTCTGCAGGACACAGGGATAGTCAACCCTGAAAACCACCCAATGCACTTCCACGGCCACAGCTTTTATGTGGTAGGGTATGGCACAGGCAACTATAACCCACTAATTGCACAATTCAATTTAGTGGATCCTCCATACATGAACACAATTGGAGTTCCAGTGGGTGGATGGGCAGCAATTCGCTTTGTTGCCGATAATCCAGGGGTGTGGTATATGCACTGTCACATTGATATACACAAGTCATGGGGACTAGGAGTGGTATTTATAGTGCACAATGGAAAAGGAGAGCTGGAATCCTTACCACATCCTCCACCAGACCTGCCACAATGTTAA 1716 0.4138 MANSITLFMLWLSVISTVHHVKLIAHGSTGGESTRFYDFKVQTKRVTKLCNSKDIVTINGMFPGPVVYAQEDDRIIVKVTNKTPFNVTIHWHGVRQRLSCWYDGASTITQCPIQSGQSFTYNFSVVQQKGTFFWHAHVSWLRGTVYGAMIVYPKTGVPYPFKFPYQEHIIILGEYWMKDLQKIEYDTLASGGPPPIADAYTINGHPGPNYNCSTNDFHQVDVIPGKTYLLRLINAGLNTENFFAIADHKLTIVEADAEYTKPFTTDTVMIGPGQTLNVLVSADKPVGKYSMAAAPYKSGRFVLYQNVSAIAFFNYIGAPSNSLYTPAKLPKLDDKLVVKTVMDGLRSLNQVNVFREIDENLFITIGLNVQKCHSKTPKQNCQAQDGVLAASMNNISFVNPNISILEAYYKKIKGIYTEDFPDMPPKFYDFVNGAPNNITYDTQSLNGTKTKVLKYGSKVQLILQDTGIVNPENHPMHFHGHSFYVVGYGTGNYNPLIAQFNLVDPPYMNTIGVPVGGWAAIRFVADNPGVWYMHCHIDIHKSWGLGVVFIVHNGKGELESLPHPPPDLPQC 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00561 571 PANTHER LACCASE-6 15 571 - -
Cca11g00561 571 Pfam Multicopper oxidase 167 317 IPR001117 -
Cca11g00561 571 Pfam Multicopper oxidase 426 553 IPR011706 GO:0005507|GO:0016491
Cca11g00561 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Cca11g00561 571 Gene3D - 370 571 IPR008972 -
Cca11g00561 571 SUPERFAMILY Cupredoxins 164 327 IPR008972 -
Cca11g00561 571 SUPERFAMILY Cupredoxins 32 176 IPR008972 -
Cca11g00561 571 TIGRFAM laccase: laccase 34 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cca11g00561 571 PANTHER MULTI-COPPER OXIDASE 15 571 IPR045087 -
Cca11g00561 571 CDD CuRO_2_LCC_plant 168 315 IPR034285 -
Cca11g00561 571 Gene3D - 163 350 IPR008972 -
Cca11g00561 571 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Cca11g00561 571 Pfam Multicopper oxidase 41 154 IPR011707 GO:0005507
Cca11g00561 571 SUPERFAMILY Cupredoxins 356 571 IPR008972 -
Cca11g00561 571 CDD CuRO_3_LCC_plant 415 554 IPR034289 GO:0005507
Cca11g00561 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Cca11g00561 571 Gene3D - 17 153 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00561 Cca-Chr11 8754207 8756992 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00561 K05909 - gmx:100789406 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00561 11 8754207 8756992 Cca11g00561 11 8754207 8756992 ECH