Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00552 ATGAATCAAGTGAAGCAAATCCATGGTTACACTCTAAGAAATAGCATAGACCACACCAAAATCCTCATTGAGAAGCTACTTGAAATCCCAAACCTTCACTATGCACACACGGTGTTGCACCATTCCCCAAAGCCAACCCTTTTCCTCTACAACAAGCTGATTCAAGCCTACTCCTCCCATCCTCAACACCAACACCAATGCTTCTCCATTTACTCCCAAATGCGCCTTCATGGCTTCCCACCAAACCAACACACTTTCAACTTCCTCTTCTCTGCATGCACTTCCCTTTCTTCCCCCTCCCTTGGCCAAGTTCTTCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCTGCCACTGCTTTGCTTGACATGTATGTCAAAGTGGGTACTTTGGACCTTGCACGCCAACTGTTTGATGAAATGCCTGTAAGAGGGGTGCCCACATGGAATGCTATGATGGCTGGATGTGCAAGATTTGGTCATATGGAGGGAGCATTGGAACTGTTTAGATTGATGCCTTCTAGGAATGTGGTGTCATGGACCACTATGATATCCGGTTACTCGCGGAACAAAGAGTATGGGGAGGCTTTGGGGTTGTTCCTTAGGATGGAGCAAGAGAAAGGCATAGTGCCTAATGAAGTAACCTTGGCAAGCATTTTGCCGGCTTGCGCAAATCTTGGAGCACTGGAGATTGGGAAGAGGGTTGAAGCATACGCAAGGAAATATGGGTTCTTTAAGAATTTGTATGTAAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTATGATTGATGTAGCTTGGCGGGTGTTCAATGAGATTGGTAGCATGAGAAACTTGTGCTCGTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGACAATGTTGCTTGGCCCTTGATCTTTATGATCAAATGTTGGGAGAAGGAACTTCACCTGATGATGTGACATTTGTGGGCCTCCTCTTGGCATGCACTCATGGAGGCATGGTTGAAAAGGGCAGGCATATCTTCAAGTCAATGACCTCATCCTTCCACAATACTCCCAAACTAGAACACTATGGATGCATGGTTGGTCTCTTAGGCCGTGCCGGGCAATTAAGAGAAGCTTATGAGATCATACATAGCATGCCTATGAAACCAGACTCGGTGATATGGGGGGCTCTATTGGGAGCTTGCAGCTTCCATGGTAATGTTGAGCTTGCTGAGATTGCAGCTGAGTCTCTATTTGTGCTTGAGCCTTGGAATCCGGGAAACTATGTCATTCTTTCCAATATTTATGCATCAGCTGGCAAATGGGGTGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGAAGCCAAATTACAAAGTCAGCTGGACATAGTTTCATTGAAGAGGGAGGTCAACTGCATAAGTTCATCGTGGAAGATAGATCACATCCTAAAAGCAACGAAATTTTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATGTCATTTGGATCAGGGATTTTACAACTAA 1533 0.4475 MNQVKQIHGYTLRNSIDHTKILIEKLLEIPNLHYAHTVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSIYSQMRLHGFPPNQHTFNFLFSACTSLSSPSLGQVLHTHFIKSGFEPDLFAATALLDMYVKVGTLDLARQLFDEMPVRGVPTWNAMMAGCARFGHMEGALELFRLMPSRNVVSWTTMISGYSRNKEYGEALGLFLRMEQEKGIVPNEVTLASILPACANLGALEIGKRVEAYARKYGFFKNLYVSNAVLEMYAKCGMIDVAWRVFNEIGSMRNLCSWNSMIMGLAVHGQCCLALDLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTSSFHNTPKLEHYGCMVGLLGRAGQLREAYEIIHSMPMKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGKWGGVAKLRKVMKGSQITKSAGHSFIEEGGQLHKFIVEDRSHPKSNEIFALLDGVYEMIKLNRSAFECHLDQGFYN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00552 510 Pfam PPR repeat 356 381 IPR002885 -
Cca11g00552 510 Pfam PPR repeat 122 149 IPR002885 -
Cca11g00552 510 Pfam PPR repeat 255 277 IPR002885 -
Cca11g00552 510 Gene3D Tetratricopeptide repeat domain 255 481 IPR011990 GO:0005515
Cca11g00552 510 Gene3D Tetratricopeptide repeat domain 23 150 IPR011990 GO:0005515
Cca11g00552 510 Gene3D Tetratricopeptide repeat domain 151 245 IPR011990 GO:0005515
Cca11g00552 510 TIGRFAM PPR: pentatricopeptide repeat domain 151 180 IPR002885 -
Cca11g00552 510 TIGRFAM PPR: pentatricopeptide repeat domain 181 216 IPR002885 -
Cca11g00552 510 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Cca11g00552 510 Pfam PPR repeat family 282 328 IPR002885 -
Cca11g00552 510 Pfam PPR repeat family 178 227 IPR002885 -
Cca11g00552 510 Pfam PPR repeat family 45 93 IPR002885 -
Cca11g00552 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 81 IPR002885 -
Cca11g00552 510 PANTHER OS06G0125600 PROTEIN 2 461 - -
Cca11g00552 510 Pfam E motif 399 461 IPR046848 -
Cca11g00552 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Cca11g00552 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 214 IPR002885 -
Cca11g00552 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cca11g00552 510 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00552 Cca-Chr11 8528536 8530614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00552 5 494 Glycoside Hydrolase AT3G49170 33.803 4.58e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00552 - - gmx:100790321 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00552 11 8528536 8530614 Cca11g00552 11 8528536 8530614 ECH