Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00549 ATGAACCAGGAAATGAATGGGGTTGATGCTGAGAAAATAGATTATGATGTTCAGGAGAAAACCGATTATGTGTTCAAGGTGGTGGTCATAGGGGACTCAGCAGTTGGAAAGACTCAAATTCTCTCGAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGAGTTGAATTTCAGACTAGGACTGTCACTATTAATGGCAAAGTCATCAAGGCTCAGATCTGGGACACTGCTGGCCAAGAAAGGTACAGAGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTGGTGTACGACATAACCAAAAGACAATCGTTTGATCATGTTGCTAGGTGGGTTGAGGAACTGCGTGCACACGCAGATAGCTCCATTGTGATCATGTTGGTTGGGAACAAAGCTGATCTTGTGGACCTGAGAATGGTGCTAACTGAAGATGCAGTGGAGTTTGCTGAGGACCAGGGCCTATTCTTCTCTGAGACTTCAGCTCTCAGTGGTGACAACGTGGAGAGTGCATTTCTCAAGTTGCTAGAAGAGATCAACAGGGTAGTGTCCAAAAAAGCTTTGGAATGTGGTAATGGGAAGGAGAATGGTGACAATAATGTTACCTCACTCAAAGGAACAAAGGTTGATGTACTCTTGGGTACTGAATTGGAAATCAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA 711 0.4416 MNQEMNGVDAEKIDYDVQEKTDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDLRMVLTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECGNGKENGDNNVTSLKGTKVDVLLGTELEISEMKKLSSCSC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00549 236 TIGRFAM small_GTP: small GTP-binding protein domain 24 178 IPR005225 GO:0005525
Cca11g00549 236 CDD Rab11_like 22 185 - -
Cca11g00549 236 PANTHER RAS-RELATED PROTEIN RABA3 1 236 - -
Cca11g00549 236 SMART ran_sub_2 30 231 - -
Cca11g00549 236 ProSiteProfiles small GTPase Rho family profile. 18 189 - -
Cca11g00549 236 SMART rho_sub_3 27 191 IPR001806 GO:0003924|GO:0005525
Cca11g00549 236 SMART ras_sub_4 22 188 - -
Cca11g00549 236 Pfam Ras family 26 186 IPR001806 GO:0003924|GO:0005525
Cca11g00549 236 Gene3D - 17 216 IPR027417 -
Cca11g00549 236 ProSiteProfiles small GTPase Ras family profile. 19 219 IPR001806 GO:0003924|GO:0005525
Cca11g00549 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 189 IPR027417 -
Cca11g00549 236 SMART rab_sub_5 25 188 - -
Cca11g00549 236 PRINTS Transforming protein P21 ras signature 25 46 - -
Cca11g00549 236 PRINTS Transforming protein P21 ras signature 48 64 - -
Cca11g00549 236 PRINTS Transforming protein P21 ras signature 66 88 - -
Cca11g00549 236 PRINTS Transforming protein P21 ras signature 128 141 - -
Cca11g00549 236 PRINTS Transforming protein P21 ras signature 163 185 - -
Cca11g00549 236 PANTHER - 1 236 - -
Cca11g00549 236 ProSiteProfiles small GTPase Rab1 family profile. 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00549 Cca-Chr11 8496557 8498515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00549 K07904 - gmx:100799439 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00549 11 8496557 8498515 Cca11g00549 11 8496557 8498515 ECH
Cca03g03174 03 53157315 53159195 Cca11g00549 11 8496557 8498515 PCT