Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00539 ATGGGTATGGGGGAAAAGAGTCCAAAGAGCTTCCATATGCAGCACCGGAACCAGCAGAAGCAAGAGTTCAGAGGGGTCCCAAAAGGGTGCATGGCGATTAAAGTGGGTCAAGGAGAAGAGCAAGAAAGGTTCGTGGTGCCTGTCATGTACATCAACCACCCTCTCTTCATGCAGCTTCTCAAAGAGGCTGAGGAAGAGTACGGTTTCGACCAAAAGGGTACCATAACAATCCCTTGCCATGTCGAGGAATTCAGAAACGTTAGAGGCTTGATTGATAGGGACAAGTCCCTTCACCACCACCACCATGTTGGTTGCTTTGGCTTCTGA 327 0.4954 MGMGEKSPKSFHMQHRNQQKQEFRGVPKGCMAIKVGQGEEQERFVVPVMYINHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDKSLHHHHHVGCFGF 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00539 108 Pfam Auxin responsive protein 18 87 IPR003676 GO:0009733
Cca11g00539 108 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00539 108 PANTHER SMALL AUXIN-UP RNA-RELATED 15 102 - -
Cca11g00539 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00539 Cca-Chr11 8104542 8106833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00539 26 104 Calmodulin-binding Proteins AT5G20810 46.250 1.31e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00539 K14488 - gmx:111188139 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00539 11 8104542 8106833 Cca11g00539 11 8104542 8106833 ECH
Cca11g00539 11 8104542 8106833 Cca03g03184 03 53263700 53273971 ECH
Cca03g03184 03 53263700 53273971 Cca11g00539 11 8104542 8106833 PCT