Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00535 ATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCATTCCCACCTACAAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAACCTTGGAAAACTAGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCTATGCAAGCTGGATTCTATATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAGCAAGGAATGTTTCCCCAGAAAATGCCATTGCAATTTGGTAATCCACATCAAATGCAGGATCAACAGCAGCAGCTACACCAGCAGGCCATGCAAGGTCAAATGGGACTGAGACCTGGAGGGATAAATAATGGCATGCATCCAATGCACGGTGAGGCTGCTCTTGGAGGTGGCAACAGTGGTGGTCCACCTTCAGGTGCTGGTGCAAACGATGCACGCGGTGGAGGCAAGCAAGATGCTTCTGAGGCTGGGCCAGCTGGTGGAGATGGCCAAGGCAGCTCTGCGGCTGCAGATGGTGAATCCTCTTATCTGAAGGGATCAGAAGATGCAAAGTGA 645 0.4961 MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQAGFYMQHPQAAAMAQQQGMFPQKMPLQFGNPHQMQDQQQQLHQQAMQGQMGLRPGGINNGMHPMHGEAALGGGNSGGPPSGAGANDARGGGKQDASEAGPAGGDGQGSSAAADGESSYLKGSEDAK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00535 214 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 1 184 IPR044779 GO:0003713
Cca11g00535 214 MobiDBLite consensus disorder prediction 138 214 - -
Cca11g00535 214 PANTHER BNAA09G51550D PROTEIN 1 184 - -
Cca11g00535 214 Pfam SSXT protein (N-terminal region) 18 74 IPR007726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00535 Cca-Chr11 7970522 7975448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00535 - - vun:114167142 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00535 11 7970522 7975448 Cca11g00535 11 7970522 7975448 ECH