Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00530 ATGATTGCACCTCGTTTTGGGATTTTGGGGATGGTTCAAACTATATATATATACGGTCTAAAGCATATCACAAAAGCACATGCTATTCTTAGATCCAAAAGGATGTCACACAAAGCCTTGAGTTCAACCcttatctttctcttcttctcttccttggtgctctcttctcCGCCAGAGGATCCAATAAAGTGCTCCTCAAACAACACAACATGCACCATCACAAACTCCTATGGCGCCTTCCCCGACCGAAGCATCTGCAACGCATCTCAGGTGTTGTACCCGACAACGGAGCAAGAGCTCGTGTCAGTGGTTGCATCAGCAACAAGAAACAAAACAAAGATGAAAGTGGCCACGCGTTTCTCCCACAGCATCCCCAAGTTGGTGTGTCCTGAAGGCCAAAACGGGTTGCTTATAAGCACCAAGTACCTGAACCAAGTGCTGAGCATTGATGTGGAAGCAAGGACAATGAGAGTGGAGAGTGGTGTCACATTGAAGCAACTCATTGGTGAGGCTGCTAGGGTAGGGTTGGCCTTGCCATATGCACCATATTGGTGGGGTTTGACCATTGGGGGGCTCATGGGAACCGGTGCTCATGGAAGCACTTTGTGGGGGAAGGGTAGTTCTGTCCATGATTATGTGGTGGAGATTAGGATTGTTAGGCCTTCAGGTCCTCAAGATGGATATGCCAAGGTTGAGACACTCAATGAACAAAATGAAGATCTCAATGCAGCTAAAGTGTCACTTGGTGTGCTAGGAGTTATTTCACAGATTACTCTGAAACTAGAACCTCTCTTCAAGCGATCCATCACGTACGTGGCAAAAGATGATTCAGATTTGGGAGACGAAGTGGGTGGTTTTGGACATGCACACGAGTTTGCGGATATAACGTGGTACCCAAGTCAACGAAAAGCTGTATATCGCGTTGACGATCGTGTCCCAATTAACACATCGGGCAATGGTCTCTATGACTTTCTCCCATTTCGTCCCACTCCTTCAGTTGCATTAGCTCTCATAAGAACCACAGAGGATGTTCAAGAGTCCACTAATGATGCCAATGGAAAGTGCATCAGTTCAAAGACCACAACGAATACCCTCCTCAACGCAGCTTATGGAATTACCAACAATGGAATAATCTTCACAGGATACCCTGTAATTGGATTTCAGAATCGCCTTCAGGCATCTGGGTCATGTTTGGATAGTCTTCAAGATGGAAGGCTTTCAGCATGTGCCTGGGATTCAAGGGTGAAGGGAGAGTTTTTCCACCAAACCACATTCAGCATTAGGTTGTCCCTTGTGAAGAATTTCATTGAAGATGTGCAAAAGCTAGTTCAATTGGAGCCTAAGGGATTGTGTGGCTTAGAGCTTTACAATGGAATCCTCATGCGTTATGTCAAGGCTTCAAGTGCATACTTGGGGAAGCAAGAGGATGCTCTAGACTTTGACATCACCTATTACCGTAGCAAGGACCCTATGACCCCTAGGCTTTATGAGGACATTATTGAAGAGATTGAACAACTTGGGATTTTCAAATATGGAGGGCTACCTCATTGGGGTAAGAATAGGAACTTGGCGTTTGAAGGAGTCATCAAGAAGTACTTAAATGCACAGAAATTTTTTAGGGTTAAAGAGAGATATGATTCACAAGGACTTTTCTCAAGTACTTGGACAGACCAAGTGCTTGGGCTAAAGGATGGTCTCACAATAGTGAAGGATGGATGTGCCTTAGAAGGTTTGTGCATTTGCTCACAGGATAGTCATTGCAATCCTAGCAAAGGTTACTATTGTAGACCAGGCAAAATTTACAAGGAAGCAAGGGTTTGTACTCATTTGAAATCCAAATGA 1842 0.437 MIAPRFGILGMVQTIYIYGLKHITKAHAILRSKRMSHKALSSTLIFLFFSSLVLSSPPEDPIKCSSNNTTCTITNSYGAFPDRSICNASQVLYPTTEQELVSVVASATRNKTKMKVATRFSHSIPKLVCPEGQNGLLISTKYLNQVLSIDVEARTMRVESGVTLKQLIGEAARVGLALPYAPYWWGLTIGGLMGTGAHGSTLWGKGSSVHDYVVEIRIVRPSGPQDGYAKVETLNEQNEDLNAAKVSLGVLGVISQITLKLEPLFKRSITYVAKDDSDLGDEVGGFGHAHEFADITWYPSQRKAVYRVDDRVPINTSGNGLYDFLPFRPTPSVALALIRTTEDVQESTNDANGKCISSKTTTNTLLNAAYGITNNGIIFTGYPVIGFQNRLQASGSCLDSLQDGRLSACAWDSRVKGEFFHQTTFSIRLSLVKNFIEDVQKLVQLEPKGLCGLELYNGILMRYVKASSAYLGKQEDALDFDITYYRSKDPMTPRLYEDIIEEIEQLGIFKYGGLPHWGKNRNLAFEGVIKKYLNAQKFFRVKERYDSQGLFSSTWTDQVLGLKDGLTIVKDGCALEGLCICSQDSHCNPSKGYYCRPGKIYKEARVCTHLKSK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00530 613 ProSiteProfiles PCMH-type FAD-binding domain profile. 84 264 IPR016166 GO:0071949
Cca11g00530 613 Pfam D-arabinono-1,4-lactone oxidase 422 558 IPR007173 GO:0003885|GO:0016020
Cca11g00530 613 PANTHER D-ARABINONO-1,4-LACTONE OXIDASE-LIKE PROTEIN 36 610 - -
Cca11g00530 613 SUPERFAMILY FAD-binding/transporter-associated domain-like 80 263 IPR036318 GO:0050660
Cca11g00530 613 Pfam FAD binding domain 89 223 IPR006094 GO:0050660
Cca11g00530 613 TIGRFAM pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase 57 608 IPR010030 -
Cca11g00530 613 Gene3D - 145 263 IPR016169 -
Cca11g00530 613 Gene3D - 422 522 - -
Cca11g00530 613 PANTHER GULONOLACTONE OXIDASE 36 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00530 Cca-Chr11 7731076 7737658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00530 K00103 - gmx:100790483 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00530 11 7731076 7737658 Cca11g00530 11 7731076 7737658 ECH