Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00520 ATGGCATCATTGACTGCTTCAAGTAACCTGGTCTCTGGAAGTTCTCATGTCCACCACAGACCAACTGCTTCATATGAGTCTAAAGCAGTAGCTATGGGACTTAGATCTCTAAAACAAGCCAATACTCATAATGGGCTGAGAATTTTGAACCCGGTGGATGAGCTGCTTAACAGAACCCCAATTAAGATTAATGCAGCACAAGCTATGAAGAAGGGGCTTCAAAGCAAGAATGTCAGGCCTACAGGTATAATCATATGTGGCATGAATTTGATATTTGTAGGAACGGAGGTGGGTCCATGGAGCAAAACCGGTGGGTTAGGAGATGTTCTTGGAGGTCTGCCACCGGCATTGGCAGCTAATGGACATCGAGTTATGACTATTGCGCCTCGTTATGATCAATACAAAGATGCATGGGATACAAGTGTTGTAATTGAGGTGAAAGTAGGAGATAAAACAGAAAAGGTTCGCTTCTTCCATTGCTATAAGAGGGGAGTTGACCGTGTCTTTGTGGATCACCCGTTGTTTCTTGCAAAGGTCTGGGGGAAAACTGGAACCAAAATTTATGGACAAACTACAGGAGATGATTACGATGACAACCAACTACGTTTTAGCCTGTTTTGCCAGGCAGCTTTGGAGGCACCAAGGGTTCTGAATCTTAATTCCAATAAATATTTCTCTGGACCATATGGTGAAGATGTCATTTTCATCGCCAATGATTGGCACACTGCCCTTCTCCCCTGCTACTTGAAATCTATGTACCAGTCAGTGGGCATCTATAAGAATGCCCGAGTTGTTTATTGTATCCACAACATTGCTTACCAAGGAAGATTCGCATTCTCGGACTTTTCACTTCTAAATCTCCCAGACCAATTTAAAAGCTCCTTTGACTTTATTGATGGACATGTTAAACCAGTGATTGGAAGGAAAATCAATTGGATGAAAGCTGGGATTTTAGAATCATGGTTTGTGATAACTGTTAGTCCAAACTATGCTAAAGAACTAGTGTCAGGTCCAGACAAAGGAGTGGAGTTGGATAACATCCTTCGCAAAGTTGATAGTCGTTTTGTTGGAATAGTGAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAGCTGTGAAATACAATGTTTCAGCAGTATTGGAAGCAAAGGCTCTTCTTAAAGAAGCCCTCCAAGCTGAAGTTGGATTGCCAGTTGACAGAAATATTCCACTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGCCGCAGCTATTCCTCAATTTATCAAGGAGAATGTTCAGTTGGTAGCCCTAGGAACAGGGAAAAAACAAATGGAAAAACAGCTTCAGCAACTTGAAACATTGTACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTTGCCCACATGATAATTGCTGGAGCTGATTTTATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGATCGGTACCTATTGTTGCCTCAACAGGTGGATTAGTTGACACTGTCGAAGAAGGTTTTACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGATGCTGTGGATCCTTTGGATGTGGATGCTATAGCAAAGACTGTCAAAAGGGCCCTTGCAGTCTATGGAACTCCAGCTTTTACAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTATTGCTAAACTTGGGAGTTCCTGGCAGTCAACCTGGAATTGATGGAGAGGAAATTGCTCCACTGGCAAAGGAGAATGTGGCAACTCCATAA 1851 0.4257 MASLTASSNLVSGSSHVHHRPTASYESKAVAMGLRSLKQANTHNGLRILNPVDELLNRTPIKINAAQAMKKGLQSKNVRPTGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTSVVIEVKVGDKTEKVRFFHCYKRGVDRVFVDHPLFLAKVWGKTGTKIYGQTTGDDYDDNQLRFSLFCQAALEAPRVLNLNSNKYFSGPYGEDVIFIANDWHTALLPCYLKSMYQSVGIYKNARVVYCIHNIAYQGRFAFSDFSLLNLPDQFKSSFDFIDGHVKPVIGRKINWMKAGILESWFVITVSPNYAKELVSGPDKGVELDNILRKVDSRFVGIVNGMDVQEWNPSTDKYIAVKYNVSAVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAAAIPQFIKENVQLVALGTGKKQMEKQLQQLETLYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVEEGFTGFQMGSFNVECDAVDPLDVDAIAKTVKRALAVYGTPAFTEMIKNCMAQDLSWKGPAKKWEEVLLNLGVPGSQPGIDGEEIAPLAKENVATP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00520 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 616 - -
Cca11g00520 616 Gene3D Glycogen Phosphorylase B; 363 573 - -
Cca11g00520 616 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g00520 616 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Cca11g00520 616 Pfam Starch synthase catalytic domain 90 350 IPR013534 -
Cca11g00520 616 CDD GT5_Glycogen_synthase_DULL1-like 89 587 - -
Cca11g00520 616 Gene3D Glycogen Phosphorylase B; 90 582 - -
Cca11g00520 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 79 588 - -
Cca11g00520 616 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Cca11g00520 616 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00520 616 Pfam Glycosyl transferases group 1 407 528 IPR001296 GO:0016757
Cca11g00520 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00520 Cca-Chr11 7379427 7383193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00520 1 616 Glycosyltransferase AT1G32900 70.550 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00520 K13679 - gmx:100037476 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00520 11 7379427 7383193 Cca11g00520 11 7379427 7383193 ECH