Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00519 ATGGAGCTCGACCTCCGTTCATTCCTCCCCTCCTCCGTTTCCGACGACGACGCCGACGAAGCTCCTCACCGCACCATCGACGAAATCCTCAACGACTGCGACActtcttcttcctcttcctcacctccctcctctccctctcactccctctcttcactcACCAATCCTCAAAACCCCACTCTCCAACAACAAAAACCACTGCAACCCGCGCCCGATTCACTCTCTCGTCCCAAACCCGCACAATTCCCCGACCGCACACGCCCCTTCTCCTCTCTGCTGCGCGGCGTTAGGTCCAATGCCAAGCCCGGGGcggcgctcgctgccgccgccgccgcctcgcgatccgtccccactccgcacgccgcggcGATCATTTCCAGGAGGAAATTCGCGGCCGCGAACAGCGCCGAATCGAGTTCAATCGCTGCCACCGGCGACGACTGTTCCGATGTTTCTTCCAAAGGCGAATCGGGCGAGCCTGGCGAGAAACTCGATCCGGTGCTGCGGAAGGTCGAGACTCAATCTAGTGAAAGTGCTTCCGTTGCCGGCGAACGTTTTGAGAGTGATGCGGAAATCGCCACTGATTCGAAGGCTGGCAGTGCTGACATTCAGGTGCACAGTGATAATGATAATGATGACGATGATAAAGATAATTGTAATAGTAATAATAATGGTGATTTTATTGGTAATGGTAATGATTCTTCTGTTGTGAGTGAGGAGAAGAGGGATTTGGATGAGGTTGACCGTGATCATGTGAAGGATATGAATTCTCCACCGTTTGATGATGATGATGTTCGTGATTTTGGTGGAAATAATGGTGGTGATGAGAGAATCACTGCTACGGGTACAGCTGTGGGAACAGAAGTGGTGAATAATGGTAGTAGTTCTGTGGATGATGTTAAGAATGAGGTGAGTGTTGTTGGTGGTGATGACGGTAGTTCATCAGGTGATGTTGCTGAGCTAGTGGAAGAGAGACTTGAGGAATTGGAAAGCAGAAGAGCTGCTAAGCGAGCAGAGAAGAAACGAGAGTCTTCGATGAAGCCGCTTGAATTGGCTGAAGAACTGGAGAAGAAGCGTGCTTCCACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGGCTCGAGGGGGTTCGGAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGTGGTCACAAGAGCCATTTCATCCCAAACGTTCAGGCGGGAACAAGGATCTGCCCGAGCCTTGGCAGTTCATACTAATTACATTGCAGTAGGAATGGCAAAAGGGCTCATTGTTGTATTTCCCAGTAAATATTCGATTCATCATTCTGACAACTCTGATGGAAAGATGTTGATGCTTGCTATTCAAGGTGATCGGTCGCATGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGCTGATGGTCATGTTACCTTGTGGGATGTACAGAAAGGGGTAGTGGCAAAAGTTATTAGTGGTGAGCATACAGCACCGGTGGTACATACATTTTTTTTAGGACAGGATCCTCAGAATACTCGCCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTCCACATTATCTCAGTGGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACAGGTTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCGCCTTTTTCTCAGGGAAACACCACCACCTCAGCTAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGTGGAGATTCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCTCAACTCTCTAGACCAGATGGAATTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACACAAACATGTAGTTCTACCGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCCTTGCTTGCAATTGCTTGGGAACGAAAGGTTATTGTTGCAAAGTTAGTCAAATCAGAATTGAAAGTATATGGAAGGTGGTCTCTTGATGGTGCGGCTATAGGTCTGGCATGGCTGGATGACCAGATGCTGGTAGTTCTCACTTCAAGTGGACAACTATATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTGCTGTAAATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCAATTTAACAATATATTTGGAAATCCTGAGAAAGCTTATCATAATTCTGTTGCTGTAAGAGGAGCTTCTATTTATGTACTTGGTCCAACACATCTTCTTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTTGGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCTCATGGGGTTGTGGACCTTCCCAGAACCTTGGATGCTGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCGGTGGCATTCTGCAGTCAAGTTGGAAAACTGGATCAGTCCAACGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAGATAAAGGAGCAATATGCCCGTGTTGGTGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATTCTTTTTGATGAAATTTTCTCCAAGTTTGTGGATGTTCAACAAAGAGAAACATTTTTGGAGCTTCTGGAGCCATACATTTTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGATTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGATTATGCCGGGAGCATGGGCTATATAGTGCCCTGGTGTATGTCTTTAATAAAGGATTAGATGATTTTAGGGCGCCTCTGGAGGAGCTGTATGCTGTCTTGCAAAATAGCCAAAAGGAAAGTGCTACTGCACTTGGGTACAGAATGCTGGTTTATCTCAAGTATTGCTTTACAGGTCTTCCCTTTCCACCTGGCCGTGGAACTATTCCTCCCACACGCTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAGGACTCCTGTACTCCGAAATCACAGACAGTTTCACACTTTGTATCCAGACGACCCCACCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTGGACGTCCTCAGATGTGCTTTCATGGAAGATGAAGTTTCAAATGCATGCTCATCTTCACCAGATTCAGCCAATAAACCTGAAGAGGAAGCAAaaaaagaaaatgataatgttactgaaactcaaaatgCTTTGATTCAGAACACAGTTGATGCTCTGATTCAAATAATTGATATGAATATTGTTCCCACAGATACAACCTCTAGTAGTGGTGATAATGGGTTGATAAAGGAATGGCCTTCGAAGGACATAGGGTATCTGTTTGAGTTCATTGCATATTATGTTGCTCTTCAAAGAGCTAAGGTTTCAAAGGGTGTTCTGTGTCAAATATTGGAATATTTGACATCAGATAGTCACTTTTCAACTAATGTTTCTGTTCATGGTTCAACTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTTTGGAAGTACTTCCTGAGTCAGACTGGGATGTGTCATTTGTGCTAGGCCTTTGTGAGAGAGCCAAATATTATCAGGTTTGTGGATTGATTCATAGTGTCAGACATGAATATGTGGCTGCATTGGATAGTTATGTGAAAGATGTAGATGAGCCGGTTCACGCCTTCTCCTTTATTAACAAAGCATTCTCACAGTTAACTGACAATGACCATGCAGCTCTTCGATCAGCAGTCATGTTGCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGTGCATTCCACATGGTTATCAGTCATTTTAGTGATGAAAGTTCCCGTATCATAACTGAACTTCACACTCGTCCAAAAAGTCTTTTCCTTTATTTAAAGACTCTCATTGAGCTTCACTTATTTGGCACCCTAGACTTGTCTAATTTGAGAAAGGATGACACTGTGAATCCCCTTAATGGAAGGAAGGCCAAGGATCACACACAAGGGGTCAGAGATTACATAGAGAATATATCTAATTTCCCCAAGTACATGCGTGAAAATCCTATGCATGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCAGTACGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGTCAAGAATATGGCATTATAGATGCAGCTGCATTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCCCTTTTACTTACCCTTTCGGATCTAAATGATAAATTTGTTGAGCTTGATGCCGCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGTTGGTTCTTTGCATATGGAAGTATTCAACACTGTTTTAAGAACAAAGGAGGTAAATGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGCCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGATAGATTCATATGTTGAAGAAAGAGCGCATGAAAATAAGAGTTATTTTGGAATGCTAACTGGATCAGCAGATTCACAAGTGGACAAAGACACCTATAAAAGCAGTTGGAAAATTTCAAAGTCCCAGAATGGTCATATCCTGAGAAAGTTGCTATCCCAGTTCATTAAAGAGATTGTCGAGGGAATGATAGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTGCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTCACCATATTGGGGATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTAATAGAAGATGATTCGTTTTATACTATGAGTTTACTCAAGAAAGGGGCCTCCCATGGATATGCTCCCAGGAGTCTTTTGTGCTGTATTTGTAATTGTCTCCTAACGAAGAACTATGATAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAGTGCACCTGCAATGTGAAGTTTCGGAAAGTGAGGCCTCAAGCAAAGGATCTTCATCTGGATGCCCTGTATGCATGCCTAACAAGAAATCCCAGAAGTCTAGAAACAAATCAATCGTTGCAACGAATGGCTTGGTCAATAAATTCTCATCAAGGCGCCAATACCCCCGTGGAAGTACCATTCATCCTCATGACAGTGATTTATCAGAGAATATGTACGGACAGCAACAGATGTCACGGTTTGAGATCTTGAGCAGCTTGCAGAAGAATCAGAGATTTATGCAAATAGAAAACTTGCCTCCGCTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTGAGTAGAGTAACAGACTTTCAGGCTGGGGAAAGTAGTAATAGTTCTGCTGTTACTGAGAAACGAAGTAAAAGCAAGCAAAATCGGGAGCTGAGAGTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAAGTATATTTGGCAAGGAGAAGACAAATAAGCGGTGA 5748 0.4212 MELDLRSFLPSSVSDDDADEAPHRTIDEILNDCDTSSSSSSPPSSPSHSLSSLTNPQNPTLQQQKPLQPAPDSLSRPKPAQFPDRTRPFSSLLRGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKFAAANSAESSSIAATGDDCSDVSSKGESGEPGEKLDPVLRKVETQSSESASVAGERFESDAEIATDSKAGSADIQVHSDNDNDDDDKDNCNSNNNGDFIGNGNDSSVVSEEKRDLDEVDRDHVKDMNSPPFDDDDVRDFGGNNGGDERITATGTAVGTEVVNNGSSSVDDVKNEVSVVGGDDGSSSGDVAELVEERLEELESRRAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNVVTRAISSQTFRREQGSARALAVHTNYIAVGMAKGLIVVFPSKYSIHHSDNSDGKMLMLAIQGDRSHAPVTSMSFNQQGDLLLAGYADGHVTLWDVQKGVVAKVISGEHTAPVVHTFFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTTTSASSISSMMGGVVGGDSGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGIREGSMPYTAWKYMTQTCSSTENMSAEAVERVSLLAIAWERKVIVAKLVKSELKVYGRWSLDGAAIGLAWLDDQMLVVLTSSGQLYLFSKDGTVIHQTSFAVNGIGGDDLVSYHTQFNNIFGNPEKAYHNSVAVRGASIYVLGPTHLLVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCSQVGKLDQSNDSNSRSNSVHSEIKEQYARVGGVAVEFCCHIKRTDILFDEIFSKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRIEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELYAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTPKSQTVSHFVSRRPHLNLYLLLKLDTEATLDVLRCAFMEDEVSNACSSSPDSANKPEEEAKKENDNVTETQNALIQNTVDALIQIIDMNIVPTDTTSSSGDNGLIKEWPSKDIGYLFEFIAYYVALQRAKVSKGVLCQILEYLTSDSHFSTNVSVHGSTPKNREKQVLALLEVLPESDWDVSFVLGLCERAKYYQVCGLIHSVRHEYVAALDSYVKDVDEPVHAFSFINKAFSQLTDNDHAALRSAVMLRIPELVELSREGAFHMVISHFSDESSRIITELHTRPKSLFLYLKTLIELHLFGTLDLSNLRKDDTVNPLNGRKAKDHTQGVRDYIENISNFPKYMRENPMHVPDDLIELYLELLCQYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALLLTLSDLNDKFVELDAAVEAVVLNHRRVGSLHMEVFNTVLRTKEVNDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLIDSYVEERAHENKSYFGMLTGSADSQVDKDTYKSSWKISKSQNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLLCCICNCLLTKNYDSSGIRIFNCGHAVHLQCEVSESEASSKGSSSGCPVCMPNKKSQKSRNKSIVATNGLVNKFSSRRQYPRGSTIHPHDSDLSENMYGQQQMSRFEILSSLQKNQRFMQIENLPPLKLAPPAVYHEKVSRVTDFQAGESSNSSAVTEKRSKSKQNRELRVKGSSIRFPLKSSIFGKEKTNKR 1915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00519 1915 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 500 IPR001680 GO:0005515
Cca11g00519 1915 ProSiteProfiles Zinc finger RING-type profile. 1724 1772 IPR001841 -
Cca11g00519 1915 PANTHER VACUOLAR PROTEIN SORTING VPS41 296 1843 IPR045111 GO:0006623
Cca11g00519 1915 MobiDBLite consensus disorder prediction 1131 1155 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 1760 1783 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 133 300 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 236 271 - -
Cca11g00519 1915 Pfam Golgi CORVET complex core vacuolar protein 8 940 1124 IPR025941 -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 16 30 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 31 70 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 133 151 - -
Cca11g00519 1915 SMART WD40_4 705 742 IPR001680 GO:0005515
Cca11g00519 1915 SMART WD40_4 450 491 IPR001680 GO:0005515
Cca11g00519 1915 SMART WD40_4 400 437 IPR001680 GO:0005515
Cca11g00519 1915 SMART ring_2 1724 1772 IPR001841 -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 1 96 - -
Cca11g00519 1915 Coils Coil 1144 1164 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 221 235 - -
Cca11g00519 1915 PANTHER - 296 1843 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 152 170 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 284 300 - -
Cca11g00519 1915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 495 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 206 220 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 1867 1881 - -
Cca11g00519 1915 SUPERFAMILY WD40 repeat-like 411 750 IPR036322 GO:0005515
Cca11g00519 1915 MobiDBLite consensus disorder prediction 331 350 - -
Cca11g00519 1915 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Cca11g00519 1915 SUPERFAMILY RING/U-box 1717 1774 - -
Cca11g00519 1915 MobiDBLite consensus disorder prediction 1867 1897 - -
Cca11g00519 1915 Gene3D - 382 530 IPR015943 GO:0005515
Cca11g00519 1915 Coils Coil 319 346 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00519 K20178 - gmx:100780869 3184.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00519 11 7343896 7355715 Cca11g00519 11 7343896 7355715 ECH