Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00499 ATGGTGGTGGCTGCAGGTGCTAAGTTCAATTTGAGAAAAGGCAATGGTTCTTCTCATAATGGGTATAGCAGCGATGGAGATCTTTCCAGAATTAATAAGAGTGGGTGTTTTTCATCAGTGGCTGAGGTGGATAGAGACCCTTCTTGCGTTTCATTTACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCAAAGAACCAAGTCCCACGAGAAAGTGACTTCAGATCATTTTGGTTGGACAGGAATGAAAGGATTCTTGATTGCTTGCTTTCCGAATCATCTTCCATTATGTGCCTCCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGCTACCATCTCTTCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTCTGCTGACTGCTATAGATACAGAATGTCTAAGAGTTGTGGATTATCGAGAGTTGCTTTTTAACGATTGCTGCGATCGTGTTGCTCAGTTGTTACATGTTCAGTCAGTTACACCCTTTGCACAAAACCAAAAAGGAAGTGTTCCCCAAGAGTTTCTGATTGTGAACACTCACTTGTTATTTCCTCATGATTCAAGTCTTTGCGTGGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTACCAGAGAGAAAACAGGCTCAAACCAATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGACATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCTAATCAATACAGTGACAGTTATGCAGATGCCCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGTAAAGCTTCACTGTCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTACGCTGATTCTGTTACATATTTTAGTTTCTCTGAAGCACTCCGTCAGGTACTTGTATCTGCTAATATGTGA 1089 0.416 MVVAAGAKFNLRKGNGSSHNGYSSDGDLSRINKSGCFSSVAEVDRDPSCVSFTTFNILAPIYKRIDPKNQVPRESDFRSFWLDRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYHLFKLARTNNRGDGLLTAIDTECLRVVDYRELLFNDCCDRVAQLLHVQSVTPFAQNQKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASLSEDDAFAFLKGDNYADSVTYFSFSEALRQVLVSANM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00499 362 Gene3D Endonuclease/exonuclease/phosphatase 36 324 IPR036691 -
Cca11g00499 362 Pfam Endonuclease/Exonuclease/phosphatase family 81 264 IPR005135 GO:0003824
Cca11g00499 362 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 13 355 - -
Cca11g00499 362 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 13 355 - -
Cca11g00499 362 SUPERFAMILY DNase I-like 44 265 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00499 Cca-Chr11 6978695 6982896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00499 26 358 EF-hand Containing Proteins AT5G54130 67.568 1.47e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00499 - - gmx:100788191 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00499 11 6978695 6982896 Cca11g00499 11 6978695 6982896 ECH