Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00488 ATGCACATGGATTCCTCCTCCGACGAGGAGGACGACCGCCGGAACCTCGTCGAGCAGAACCACCGCAAACCCCCCTCCCCGCCCGCCGTCGCGGCGTTCCACGTCGAAGATCTCTCCTCGCGCTTCCACCGCGTGAGTTTCAAGCTCCAGAAGAAGTACATTATCGCCATCGTAGCTctcctcgtcttcctcttcttctttgtcgtcaccgatttccacagcctcttcccaacctcttctctCAGGTTCGATTCCCTCTCCGATCGAATGAAGGAATCCGAATTGCGCGCAATTAACCTATTACGCCAACAGCAGCTAGGGCTCCTAACCGCGCTCCGAACCAACGCTTCGGATCCCAAGCAGTTGGAGGATCTCAAATCCGCGTTGTTCAAACAAATTTCCCTCAACCGCCATATTGAGCAGGTTCTGCTGAATCCGCATGGCGCGGGGAACTCAATTGAGCCTGAATTCGACTTCGGAAACGCCACTTTAAACGGCGTTGCTTACGACAGGTGCAGGACGGTGGATCAGAATTTGTCGCAGAGGAAAACCATCGAGTGGAACCCTAGGGATGGTAAATTCTTACTTGCGACATGCGTTTCCGGTCAAATGTCGAACCATTTGATTTGTTTGGAGAAACACATGTTTTTCGCTGCCTTGCTAAATAGGGTTTTGGTGATTCCTAGTTCCAAAGTGGATTTCCAGTACGATAGAGTTGTGGACATCGATCACATTAACAAGTGCTTGGGGAAGAAAGTGGTGGTTTCGTTTGACGAGTTTTCGGATGTGAAGAAGGGTCACTTGCACATTGATAAGTTCTTGTGTTATTTTTGGAAGCCTCAGCCTTGTTTTCTGGATGATGAACGGCTGAAGAAGCTGCGTTCGTTGGGTTTGTCGATGAGTAAACCTGAGGCTGTTTGGAATGATGAGGATATCGGGAATCCAAAGAAGAAGACGGTTCAGGATGTGTTGGATAAGTTCAGCTATGATGATGATGTTATGGCAATTGGGGATGTGTTCTATGCTAACCTTGAACGCGAATGGGCGATGCAACCGGGTGGCCCAATTGCTCACAAATGCAAGACTTTGATTGAACCGAATCGCCTCATTAGGCTTACTGCTCAGCGGTTTGTTCAGACATTCTTGGGAAGGAACTTCATTGCATTGCACTTTCGAAGACACGGGTTTTTGAAATTCTGTAATGCTAAGAAGCCGAGTTGCTTCTACCCCATTCCTCAAGCAGCAGATTGCATCTTGAGGGTGATTGAGAGGGCTGATGCTCCTGTCATTTATCTTTCTACGGATGCAGCAGAAAGTGAAACTGGTCTGCTTCAGTCACTAGTTATGCTGAACGGCAGGCCTGTTCCTCTTGTAATACGTCCACCTCGTAATTCAGCAGAAAAATGGGATGCTCTGTTATACAGGCATGGTATTGAGGGAGATTCACAGGTGGAAGCTATGCTAGACAAGACCATATGTGCCATGTCTAGTGTGTTCATTGGGGCCTCTGGTTCCACTTTCACCGAAGACATCCTGCGGCTAAGAAAGGACTGGGGATCAGCATCCATGTGTGACGAGTATCTTTGCCAAGGTGAAGAACCAAATGTTGTAGCAGAAAATGAATGA 1626 0.4637 MHMDSSSDEEDDRRNLVEQNHRKPPSPPAVAAFHVEDLSSRFHRVSFKLQKKYIIAIVALLVFLFFFVVTDFHSLFPTSSLRFDSLSDRMKESELRAINLLRQQQLGLLTALRTNASDPKQLEDLKSALFKQISLNRHIEQVLLNPHGAGNSIEPEFDFGNATLNGVAYDRCRTVDQNLSQRKTIEWNPRDGKFLLATCVSGQMSNHLICLEKHMFFAALLNRVLVIPSSKVDFQYDRVVDIDHINKCLGKKVVVSFDEFSDVKKGHLHIDKFLCYFWKPQPCFLDDERLKKLRSLGLSMSKPEAVWNDEDIGNPKKKTVQDVLDKFSYDDDVMAIGDVFYANLEREWAMQPGGPIAHKCKTLIEPNRLIRLTAQRFVQTFLGRNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCILRVIERADAPVIYLSTDAAESETGLLQSLVMLNGRPVPLVIRPPRNSAEKWDALLYRHGIEGDSQVEAMLDKTICAMSSVFIGASGSTFTEDILRLRKDWGSASMCDEYLCQGEEPNVVAENE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00488 541 CDD O-FucT_like 357 515 - -
Cca11g00488 541 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g00488 541 PANTHER - 4 541 - -
Cca11g00488 541 PANTHER GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 4 541 IPR045130 GO:0036066|GO:0046922
Cca11g00488 541 Pfam GDP-fucose protein O-fucosyltransferase 214 515 IPR019378 -
Cca11g00488 541 Gene3D - 359 529 - -
Cca11g00488 541 Coils Coil 536 541 - -
Cca11g00488 541 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00488 Cca-Chr11 6786504 6789792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00488 K03691 - gmx:100776069 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00488 11 6786504 6789792 Cca11g00488 11 6786504 6789792 ECH