Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g00481 | ATGGCGGAGAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCAAGTGATATTCTTGAGTGGCATTATGTGTTGGAAGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCCCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTTTCAAGCATATTAACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCGTTCAACTGCAAGAATGCTACATTCAGGAAGATGTTCCCTGAGTATGTGGAGAAATACAACCAGCAACAGCTTTCTGAACAGGCTGCTCTAGAGAGGGTCTCATCCGAGACGTCTCCCGACAAGAGCTCAAGGCCAGTTTTGGAAAAGAAATTAGAATCCACAGGAGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGATGTGAGAAAAAACAGAAAACCATTTCCAGCGTGGATGTTGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCACTACTTCAGCTGTGA | 720 | 0.4389 | MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAALERVSSETSPDKSSRPVLEKKLESTGGEDMRRVDGLKDVRKNRKPFPAWMLLLLFSIFGVVMALPLLQL | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g00481 | 239 | CDD | UBCc | 7 | 157 | IPR000608 | - | |
| Cca11g00481 | 239 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 178 | IPR016135 | - | |
| Cca11g00481 | 239 | PANTHER | BNAA06G11590D PROTEIN | 3 | 239 | - | - | |
| Cca11g00481 | 239 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
| Cca11g00481 | 239 | SUPERFAMILY | UBC-like | 5 | 157 | IPR016135 | - | |
| Cca11g00481 | 239 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 162 | IPR000608 | - | |
| Cca11g00481 | 239 | Pfam | Ubiquitin-conjugating enzyme | 9 | 132 | IPR000608 | - | |
| Cca11g00481 | 239 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 3 | 239 | - | - | |
| Cca11g00481 | 239 | MobiDBLite | consensus disorder prediction | 169 | 200 | - | - | |
| Cca11g00481 | 239 | SMART | ubc_7 | 8 | 162 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g00481 | Cca-Chr11 | 6743488 | 6748057 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g00481 | 1 | 239 | Miscellaneous Gene Families | AT1G17280 | 79.253 | 1.24e-138 | 387 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g00481 | K04554 | - | gmx:100778181 | 473.011 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g00481 | 11 | 6743488 | 6748057 | Cca11g00481 | 11 | 6743488 | 6748057 | ECH |