Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00475 ATGCGGAAATCCGCAGCTGACAGATTCAGGCACCTTTTCAACCGTTCACTTCTTCTTCGCCATCATCATCACAATCCCcctcccctctcttcttctctctctcgccccttctctTCCATGGCTTCTGATTCCCCTTTCCCTGTCACCGCTCACAACATCAACCCCAAGGTTCTGAAATGTGAGTATGCTGTTAGGGGAGAAGTTGTCACACTTGCGCAGAATTTGCAAAAGGATTTACAGGCCAATCCTGGTGCTCATCCATTTGATGAGATACTTTACTGCAACATTGGAAATCCTCAGTCTCTTGGCCAGGCTCCAATAACTTTTTTCCGAGAGGTTCTTGCATTATGTGACCATCCAACTATATTGGACAAAAGTGAAACACAGGGTTTGTTCAGTGCTGATGCAATAGAGCGAGCTTGGCAGATTGTGGATCAGATTCCTGGGAGAGCTACCGGTGCCTATAGCCATAGTCAGGGTGTCAAGGGCTTGCGTGATACAATAGCTGCTGGAATTTCAGAGCGTGATGGTTTTCCTGCCAATCCTGATGATATTTTCATGACAGATGGTGCAAGCCCTGCAGTCCATAATATGATGCAATTACTCATTAGATCGGAAAATGATGGTATTCTGTGTCCCATTCCACAGTACCCTCTGTACTCAGCCTCAATTACCCTCCATGGTGGCAACCTGGTACCTTATTATTTAGAAGAAGCTACAGGTTGGGGATTGGAAATACCTGAACTCAAGAAGCAATTGGATGCTGCCAAGTCAAAGGGCATCCATGTTAGAGCTTTAGTTGTTATAAATCCTGGCAATCCAACAGGGCAGGTTCTTTCTGAGGAAAATCAGCGGGATATAGTGGAATTTTGCAAGCAAGAAGGTTTGGTTCTTTTAGCTGATGAGGTATATCAAGAAAATGTCTATGTTCCTGAGAAGAAATTTCACTCTTTCAAGAAGGTAACTCGGTCCATGGGATATGGTGAGGATGATATCACCTTAGTATCTTTTCAATCAGTCTCGAAAGGCTACCATGGGGAGTGTGGGAAACGAGGAGGTTATATGGAGGTGACTGGATTTTCTACAGAAGTGAGGGAACAAATATATAAAATGGCATCTGTCAACCTTTGCTCTAATATCTCTGGTCAAATTCTTGCAAGCTTGGTCATGAGCCCACCCAAGGTTGGAGACGAGTCATATGAGTCATTCATGGCTGAGAAGGGGAATATTTTGGCATCCCTTGCTAGGCGTGCAAAGACACTAGAAGATGCATTCAACAAATTAGAGGGTGTAACATGCAACAGAGCAGAAGGGGCAATGTATCTGTTTCCCCAAATTCGGCTGCCTGGAAAGGCTATCAAAGCTGCGGAGGAAGCAAATACAGCACCTGATAACTTCTATTGCAAACACTTGCTCAATGCCACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGGTTCCTGGCACATGGCATTTTAGGTGCACAATATTGCCTCAAGAAGAGAAGATTCCGGCCATTGTTACCCGCTTGACAGAGTTCCATGAAAAATTCATGGATGAGTTCCGTGATTAA 1578 0.4341 MRKSAADRFRHLFNRSLLLRHHHHNPPPLSSSLSRPFSSMASDSPFPVTAHNINPKVLKCEYAVRGEVVTLAQNLQKDLQANPGAHPFDEILYCNIGNPQSLGQAPITFFREVLALCDHPTILDKSETQGLFSADAIERAWQIVDQIPGRATGAYSHSQGVKGLRDTIAAGISERDGFPANPDDIFMTDGASPAVHNMMQLLIRSENDGILCPIPQYPLYSASITLHGGNLVPYYLEEATGWGLEIPELKKQLDAAKSKGIHVRALVVINPGNPTGQVLSEENQRDIVEFCKQEGLVLLADEVYQENVYVPEKKFHSFKKVTRSMGYGEDDITLVSFQSVSKGYHGECGKRGGYMEVTGFSTEVREQIYKMASVNLCSNISGQILASLVMSPPKVGDESYESFMAEKGNILASLARRAKTLEDAFNKLEGVTCNRAEGAMYLFPQIRLPGKAIKAAEEANTAPDNFYCKHLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEEKIPAIVTRLTEFHEKFMDEFRD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00475 525 Coils Coil 411 431 - -
Cca11g00475 525 Pfam Aminotransferase class I and II 150 504 IPR004839 GO:0009058|GO:0030170
Cca11g00475 525 PANTHER ALANINE AMINOTRANSFERASE 40 524 IPR045088 GO:0008483
Cca11g00475 525 CDD AAT_like 138 514 - -
Cca11g00475 525 Gene3D Aspartate Aminotransferase, domain 1 52 523 IPR015422 GO:0003824
Cca11g00475 525 Gene3D - 102 152 - -
Cca11g00475 525 PANTHER ALANINE AMINOTRANSFERASE 2 40 524 - -
Cca11g00475 525 SUPERFAMILY PLP-dependent transferases 50 519 IPR015424 -
Cca11g00475 525 Gene3D - 153 399 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00475 Cca-Chr11 6640647 6647365 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00475 K00814 - gmx:100127413 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00475 11 6640647 6647365 Cca11g00475 11 6640647 6647365 ECH