Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00474 ATGGACCTCCCCACCCACAAATTATTCCAATCTCCATCTAAATTGCCACCACCACCTGGGAAGCCACTCCCTGAGAGCAAAATGAGCTTGTATGGGAAAACCCAAGCCAACCCTTTTGCAGATGACTTCCCTGACCCACTTTGCAAGCTCAACCTGAAGGAAACCTCAGACTTTGTGAAGTCACTGCCAATGCCAAATGCTGAAAACAGAGCACACTCTGTTTCACAACAGAGTAGACTCCTAGAGTCTCCCTCCACTCCTGGGAGACCCCACTTCACCTTCAGCTCTGGCCTTCCAAGAAAGAGCTTCCCTTCAAAATGGGATGATGCTGAGAAATGGCTCATGAGCACCTCTTGCCATGACTCACCTGCTCACAACAACGTCAACAAGGTTTCTGAGCCCCCAAGGTTCAATATCAGGCAACCATGTTTTGATGGCTTCAAGCAGCAACCAATGCATGATTTCTCGGACAAATCCAGGGTCACACATGAAAGGGTGTCCAATGCTGTCCCTGGGGACATCCACTGGCCTTCATCCTTGGACCACCACCATAACACCCTTGGAGCTTTCCATGGTGCTTCAGACATTGTACTAAAAGATAAGTTCACAGACAACATAGTGCCAATTTTGCCAACTTTAAGGTATTTAGAGCCGGCTAAAGAAGGGTTCTTGTTTAGGAACCAACAAGGTGGTGGTGTGACAATGCAAAATGCTTGCTCAGAAATGGTTCATCATAGAGATATTGGCACTGAGATGACTCCTCTGGGAAGTTCCACAACTTCAAGGTGCCCCACCCCAGTCAAGATTCCATCACCTCCTCGCCACAACACTCCAGCAAGTAAGTCAGGACCATTGGCCTTGTCCAGCACTGCCAGCAATACTCTTGATGTTATTCAGCTGGAGGAGTGCCATTTTTCCAAACTGCAACTAGGATCACAGTATGACTTAGTCGTGCCTTGGAGCTCAAGTGAAGAGGAAGAAATGGAAATATCGAAAAGCTTGAGGCATAATGCTAGCCACATTGCTGATTCAGACTACATAGCTGCTGCATGGGAAGAAGAGGAGAGGACCAAGTGTTGTCTTAGGTATCAGAGGGAAGAAGCAAAAATCCAAGCTTGGGTAAACCTCCAGAGTGCTAAAGCAGAAGCCCGGTCAAGAAAGCTTGAGGTGAAGATACAGAAGATGAGATCAAACCTCGAAGAGAAGTTGATGAAGAAGATGTCAGTGGTTCACAGGAAAGCTGAGGAGTTGAGGGCAGAAGCTAGACAACAACACTCGGAGCAAATCCAGAAGGCCACTGAACAAGCTCAAAAGATGATTCATAAGCATAACTCACAATTTTCAAGGCCTAGTTCATGTGGATGCTTCCCTTGCAATAATAACCATCATTAA 1392 0.467 MDLPTHKLFQSPSKLPPPPGKPLPESKMSLYGKTQANPFADDFPDPLCKLNLKETSDFVKSLPMPNAENRAHSVSQQSRLLESPSTPGRPHFTFSSGLPRKSFPSKWDDAEKWLMSTSCHDSPAHNNVNKVSEPPRFNIRQPCFDGFKQQPMHDFSDKSRVTHERVSNAVPGDIHWPSSLDHHHNTLGAFHGASDIVLKDKFTDNIVPILPTLRYLEPAKEGFLFRNQQGGGVTMQNACSEMVHHRDIGTEMTPLGSSTTSRCPTPVKIPSPPRHNTPASKSGPLALSSTASNTLDVIQLEECHFSKLQLGSQYDLVVPWSSSEEEEMEISKSLRHNASHIADSDYIAAAWEEEERTKCCLRYQREEAKIQAWVNLQSAKAEARSRKLEVKIQKMRSNLEEKLMKKMSVVHRKAEELRAEARQQHSEQIQKATEQAQKMIHKHNSQFSRPSSCGCFPCNNNHH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00474 463 MobiDBLite consensus disorder prediction 68 99 - -
Cca11g00474 463 Coils Coil 378 442 - -
Cca11g00474 463 PANTHER OS11G0616300 PROTEIN 1 459 - -
Cca11g00474 463 MobiDBLite consensus disorder prediction 1 37 - -
Cca11g00474 463 MobiDBLite consensus disorder prediction 68 92 - -
Cca11g00474 463 Pfam Remorin, C-terminal region 348 444 IPR005516 -
Cca11g00474 463 PANTHER OS02G0116800 PROTEIN 1 459 - -
Cca11g00474 463 MobiDBLite consensus disorder prediction 251 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00474 Cca-Chr11 6634820 6638560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00474 - - gmx:100776089 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00474 11 6634820 6638560 Cca11g00474 11 6634820 6638560 ECH