Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00471 ATGGATGCAGTGGACAAGACTTTTTCTGATCTTGTCAGCATCGTCAAATCATGGATTCCCTGGCGATCTGAGCCAGGAAATGTGTCTAGAGATTTTTGGATGCCCGACCAGAGTTGTAGAGTATGCTACGAGTGTGATTCACAGTTCACCTTATTTCATCGTAAACACCATTGTCGTCTTTGTGGACGAATTTTCTGTAACAAGTGTACAACAAACTCGATTCCTGCCTCATTTAGCAACCAAAGGAATTCTCGGGATGAGTTGGAAAAGATTCGTGTATGTAATTATTGTTACAAACAATGGGAGCAGGGTGTAGTTGCTTTTGATAAGAGTATTCCGGTTTCCAATCTGGATCATAGTGCTTCGGCATCTACTTCAAGCTCGGTTAGCAGTAAAACCAGTGCCACTGCAAACAGTAGTAATATTACTCTCTGTTCCATGCCTTATTCAGTTGGGTCTTATCAACCAATGCAACAGGGTTCTGTTCTGAACCTGCATCAATCACCTGTTAGGGCGAAAGACGCGGATGCTGACAGGGAAGGTTTTTCAGCCTTAGGAGGGAGGAGTGATCTTGTAGCAGATCTGGGTGATCCATTACCGAATAAATATGCATTCTCAATAAACAGAAGTGATGATGATGAGGATGAGTATGGTGTATATCGGTCAGATATGAGGCATTATCCTCAAGTGAATAGTTACTATGGACAATCTGAGCTTAATGGGATAGATAACATTGATGGCTTACAGAAAGTGGATCTGGACGGAGAAAACATTAATGCAAAACTCCCTTCAAACTACAGTTTTGACACACAGGGTTTGGAAGGAGCCCCGGTTATTTCAAAAAATGAAGATGAACCTGATATCTGTGATGAAAATGAAGCCCCTTCTTCATTATATGTTTCAGAGGATGTCAATGCTGAACCTGTTGATTTTGAAAATAATGGACTTCTCTGGCTCCCTCCTGAACCagaagatgaagaagatgaacaagaagccattttgtatgacgatgacgatgataatgatgGGAATGCCATTGGAGAGTGGGGGTATCTGCGCACTTCAAGCAGTTTTGGAAGTGGTGAGAATCGACACAGAGAAAGGTCAGGCGAGGAGCACAAGAAGGTAATGAAGAATGTTGTTGATGGGCATTTTAGGGCATTGGTATCTCAGCTGTTACAGGTTGAGAACCTACCTGTTGAAGAAGAGGACGAAAACAGTTGGTTGGAGATTGTCACATCTCTGTCGTGGGAAGCTGCTACTTTATTGAAACCAGATATGAGCAAAAGTGGAGGGATGGACCCAGCTGGTTATGTGAAAGTCAAATGCATAGCATGTGGGAGCCGCATTGAAAGTGTGGTGGTTAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCACCGGCGAATGACGTCAAAAGTGGATAAACCTCGCTTGTTGATCCTGGGCGGGGCTCTAGAGTATCAACGTGTTACCAACCTCTTATCTAGTGTAGATACCCTATTGCAGCAGGAAATGGACCATCTGAAGATGGCAGTGGCGAAGATAGCTTCACACCAGCCAAACATCTTGTTGGTAGAGAAATCAGTCTCACGATATGCACAGGAATATCTTCTTGCAAAGGACATATCTCTGGTTCTCAATGTAAAGAGACCACTTTTGGAGCGCGTAGCACGTTGCACTGGCACTCAAATAGTGCCTTCAATTGATCATCTTTCATCACAAAAGTTGGGTTACTGTGAAACATTTCGTGTAGAAAAGTTTGTTGAAGACCTAAATAGTGCTGGTCAGGGTGGGAAAAAAACAATGAAAACATTGATGTTTTTTGAAGGTTGCCCCAAACCATTGGGCTTCACAATTTTACTTAGAGGCGCTGACAAGGATGAATTAAAGAAGGTAAAGCATGTGGTTCAGTATGGAGTTTTTGCAGCTTACCATTTGGCTTTGGAGACATCCTTTCTTGCTGATGAAGGAGTCTCCATGCCAGAAATTCCATTAAACAGTCTGGCCCTTCCAGATGATAAAGCATCATCCATTCAGAGGTCCATTTCAACAGTTCCTGGTTTCAGTGCTGCTGGTGATGAAAAGCTTCAAGGGCATGAACCAGACACTGAACCATCGAGAATCCTCACAGTTGCTGATCTAGTCTCGTCAACTTGCGGTACAGGGCCCTGTGTGTCTAATGGTGCTTCTCAATCTATGCCACTTGGATCAAGTCTCTACAATTCAACTGCATTTTACTCCTCCATTGTTGCTTTAGGAAATTCAATTTCAGAATCGCACCATAATATGCTTCTTTCTTGCACTAGTAGAGACAGAAATGAAATGGATTCCAAACAACCTCTAGTGGAAGAAAATTCTGTTGTGGACAACACAATGGTTGTCATGGATGATCCTACTGTAGATGACCCTGGAACTTCAGAGAAATTATATCAAGGCATATCAGTTGACACTCCTCAAAATGGCGATCTCAAAATCTCTGCAATCCAGTTAAGTGGATCAGGATCTTTATCTCCAATAGATGTTCAAAACCATCCCGAGAGTCTAGGAATCACAAATGAAGAGCCAATTCTTGAAAAAGAAGAGTTTCCTCCATCTCCATCTGACCATCAAAGCATTTTGGTGTCTTTGTCCTCCCGGTGTGTATGGAAGGGAACTGTTTGTGAGAGGTCCCACCTATTTCGAATTAAATACTATGGAAACTTTGATAAGCCATTGGGTCGGTTTCTGCGGGACCATTTATTTGATCAGGGCTATCGATGCCATTCTTGTGAAATGCCAACGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCGGAAATTATCCTACCTGGTGAAAGGGATGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCGAGAATCAATGGCTTTCCACCTGCTACACAGAGAATAGTTATGTCTGATGCTGCTTGGGGTTTATCATTTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCACGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCTTTACACAGAGATTGTCTTCGTTTTTATGGATTTGGAAGAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCGGTCTACCTTCCTCCACATGAACTGATATTTGATTATCGGAATCAGGATTGGATACAACAAGAATCAGATGAGGTGGTCAACCGGGCAGAACTTCTATTCTCTGATGTACTCAACGGTCTTAGTCAAATTGGAGAGAAAAAATCTAGTGCAGTCCAAATCAACAATGGCCTCAAAACACCTGAATTAAGACGCCAAGTTGTTGAACTAGAGGGGATGTTGCAAAAGGAGAAACTAGAATTTGAGGAAACTCTTCAAAAGATTTTGAACCAAGAAAAGAGAAATGGCCAACCTGAGATTGACGTTCTGGAAATTAATCGATTGTGGAGGCAGTTACTTTTTCAATCATATATGTGGGATCACCGCCTTGTTTATGCAGCCAACTTAGTAAATTCCAACAACGAATCTGGTTCAAGCAGTCCAATTTCAGAGGATAAGGAGAATCCCACAGATGAAAATCAGATGAGTATTAAATCTATTGATGGTGATCCAAAGCTTAATGAAAGCCCTTGCCTTGGAGGAGGAAGTGTAGTAATTGATGGCAAAATTTCACAAGATGATGCATTGCATCAAGAAATTGACATGGCCAAAAATAAAAATCATGAGAAAGATGAGGAACCTAGTCTTTCAAACTGCAAAAGCATAAGTGATCAGTCTGACCTAGAACCTGAATTCGGTGTTCGCAGAACTCTCTCTGATGGGCCATTTCCTGTCATACCTAGTTTGTCTGAAACACTTGATGCAAAATGGACTGGTGAAGACCACTCAGGATTTGGAATTCAAAAGGATAACACTTCTGTAAATCCTGATAATATGACAGATGCTTTGACGATCAGTGTACAAAAAGAAACACATAATCTACTGGATCGTACAGAAGATCAAAATGGTTCCAAGAGTTTCTTTTCTTCTTTTAAAGGTCATGATAATGTGGAAGACTCCTCAAGCTGGTTAGGGATGCCCTTCTTGAACTTCTATCGCCAATTTAACAAGAACCTTTTTGCTAGTACACAGAAGTTTGATACCCTGGTTGACTACAATCCTGTTTATGTGTCATCCTTCCGGAAGCAGGAACTCCAGGGTGGGGCAAGGCTGCTTCTGCCAATTGGTGTCAATGACACTGTAATTCCGGTATATGATGATGAACCCTCAAGTATTATAGCCTATGCCTTAATGTCACCAGATTATCATTTCCAATTGGGTGATGAAGGAGAAAGGCCAAAAGAGGGTACAGAGTTGGCTTCATCATATTTTTCTGACTCAGGCCCCTTCCAGTCATTCTCATCTGTTGATGAAATGGCTTTTGATTCTCAGAAAAGTTTTGGATCAATAGAAGAAATGATATTTTCCATGTCTGGGTCTCGTAACCCGTCAATTCTGGACCCAATGTCATATACTAAAGCTATGCATGCCAAAGTTTCCTTTGGAGAAGATGGTCCCCTTGGCAAAGTAAAATATTCTGTGACTTGTTACTATGCCAAGCGTTTTGAAGCCTTAAGAAGGGTCTGTTGTCCTTCAGAGCTTGACTATATAAGGTCTTTAAGTCGTTGTAAGAAATGGGGAGCTCAAGGTGGGAAGAGTAATGTATTCTTTGCCAAAACTTTGGATGATCGGTTTATCATCAAACAAGTTACCAAAACAGAACTCGAATCATTCTTTAAATTTGGTCCTGAATACTTCAAGTACCTTTCTGAATCCATAGCCACTGGAAGTCCAACATGCCTGGCAAAGATTCTTGGCATATACCAGGTTACATCAAAGCATCTTAAAGGAGGGAAAGAATCAAGGATGGATGTTTTGGTTATGGAGAATCTTCTGTTTAGGAGGACTGTGACGAGACTTTATGATCTTAAAGGATCTTCGAGATCAAGGTATAACGCAGATAGCTCTGGGAAAAACAAAGTTCTGCTGGACCAGAACTTAATTGAAGCAATGCCAACTTCTCCTATTTTCGTTGGAAACAAAGCTAAACGGTTGTTGGAGAGAGCTGTCTGGAATGACAGTGGTTTTCTTGCTTCAGTTGATGTAATGGACTATTCTTTACTGGTTGGGATGGATGAAGAGAAGCATGAATTGGTTATTGGAATCATTGATTTCATGAGACAGTATACCTGGGACAAACATCTTGAAACATGGGTAAAAGCTTCAGGCATCCTTGGAGGACCAAAGAACACACCTCCAACAGTTATATCGCCAAAGCAATACAAGAAAAGGTTCAGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAGTGGTCTCCCAATGCCCCTTCTATTCTCACTAGTAATTCTCAGTCTGATTTAGGTGAAGACAACAACACACAATCTAGGACCCCAGCTGAATGA 5478 0.4127 MDAVDKTFSDLVSIVKSWIPWRSEPGNVSRDFWMPDQSCRVCYECDSQFTLFHRKHHCRLCGRIFCNKCTTNSIPASFSNQRNSRDELEKIRVCNYCYKQWEQGVVAFDKSIPVSNLDHSASASTSSSVSSKTSATANSSNITLCSMPYSVGSYQPMQQGSVLNLHQSPVRAKDADADREGFSALGGRSDLVADLGDPLPNKYAFSINRSDDDEDEYGVYRSDMRHYPQVNSYYGQSELNGIDNIDGLQKVDLDGENINAKLPSNYSFDTQGLEGAPVISKNEDEPDICDENEAPSSLYVSEDVNAEPVDFENNGLLWLPPEPEDEEDEQEAILYDDDDDNDGNAIGEWGYLRTSSSFGSGENRHRERSGEEHKKVMKNVVDGHFRALVSQLLQVENLPVEEEDENSWLEIVTSLSWEAATLLKPDMSKSGGMDPAGYVKVKCIACGSRIESVVVKGVVCKKNVAHRRMTSKVDKPRLLILGGALEYQRVTNLLSSVDTLLQQEMDHLKMAVAKIASHQPNILLVEKSVSRYAQEYLLAKDISLVLNVKRPLLERVARCTGTQIVPSIDHLSSQKLGYCETFRVEKFVEDLNSAGQGGKKTMKTLMFFEGCPKPLGFTILLRGADKDELKKVKHVVQYGVFAAYHLALETSFLADEGVSMPEIPLNSLALPDDKASSIQRSISTVPGFSAAGDEKLQGHEPDTEPSRILTVADLVSSTCGTGPCVSNGASQSMPLGSSLYNSTAFYSSIVALGNSISESHHNMLLSCTSRDRNEMDSKQPLVEENSVVDNTMVVMDDPTVDDPGTSEKLYQGISVDTPQNGDLKISAIQLSGSGSLSPIDVQNHPESLGITNEEPILEKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGNFDKPLGRFLRDHLFDQGYRCHSCEMPTEAHVHCYTHRQGTLTISVKKLPEIILPGERDGKIWMWHRCLRCPRINGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASIDVHSVYLPPHELIFDYRNQDWIQQESDEVVNRAELLFSDVLNGLSQIGEKKSSAVQINNGLKTPELRRQVVELEGMLQKEKLEFEETLQKILNQEKRNGQPEIDVLEINRLWRQLLFQSYMWDHRLVYAANLVNSNNESGSSSPISEDKENPTDENQMSIKSIDGDPKLNESPCLGGGSVVIDGKISQDDALHQEIDMAKNKNHEKDEEPSLSNCKSISDQSDLEPEFGVRRTLSDGPFPVIPSLSETLDAKWTGEDHSGFGIQKDNTSVNPDNMTDALTISVQKETHNLLDRTEDQNGSKSFFSSFKGHDNVEDSSSWLGMPFLNFYRQFNKNLFASTQKFDTLVDYNPVYVSSFRKQELQGGARLLLPIGVNDTVIPVYDDEPSSIIAYALMSPDYHFQLGDEGERPKEGTELASSYFSDSGPFQSFSSVDEMAFDSQKSFGSIEEMIFSMSGSRNPSILDPMSYTKAMHAKVSFGEDGPLGKVKYSVTCYYAKRFEALRRVCCPSELDYIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFFKFGPEYFKYLSESIATGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLFRRTVTRLYDLKGSSRSRYNADSSGKNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDSGFLASVDVMDYSLLVGMDEEKHELVIGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPNAPSILTSNSQSDLGEDNNTQSRTPAE 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00471 1825 CDD FYVE_PIKfyve_Fab1 32 99 - -
Cca11g00471 1825 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1B 1 1813 - -
Cca11g00471 1825 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1565 1731 IPR002498 GO:0016307|GO:0046488
Cca11g00471 1825 SUPERFAMILY SAICAR synthase-like 1523 1789 - -
Cca11g00471 1825 Gene3D GroEL 451 623 IPR027409 -
Cca11g00471 1825 MobiDBLite consensus disorder prediction 1176 1211 - -
Cca11g00471 1825 CDD PIPKc_PIKfyve 1526 1789 IPR044769 GO:0000285
Cca11g00471 1825 Pfam FYVE zinc finger 33 101 IPR000306 GO:0046872
Cca11g00471 1825 Gene3D - 1648 1790 - -
Cca11g00471 1825 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1479 1646 IPR027484 -
Cca11g00471 1825 Coils Coil 1117 1137 - -
Cca11g00471 1825 MobiDBLite consensus disorder prediction 1802 1825 - -
Cca11g00471 1825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 107 IPR013083 -
Cca11g00471 1825 SMART PIPK_2 1499 1790 IPR002498 GO:0016307|GO:0046488
Cca11g00471 1825 Pfam TCP-1/cpn60 chaperonin family 402 645 IPR002423 GO:0005524
Cca11g00471 1825 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 1 1813 - -
Cca11g00471 1825 CDD Fab1_TCP 386 657 - -
Cca11g00471 1825 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Cca11g00471 1825 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1465 1789 IPR002498 GO:0016307|GO:0046488
Cca11g00471 1825 MobiDBLite consensus disorder prediction 1241 1263 - -
Cca11g00471 1825 SUPERFAMILY GroEL apical domain-like 451 623 IPR027409 -
Cca11g00471 1825 SUPERFAMILY FYVE/PHD zinc finger 31 103 IPR011011 -
Cca11g00471 1825 SMART fyve_4 28 103 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00471 Cca-Chr11 6557379 6567575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00471 2 1825 EF-hand Containing Proteins AT3G14270 60.355 0.0 2080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00471 K00921 - gmx:100819364 3216.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00471 11 6557379 6567575 Cca11g00471 11 6557379 6567575 ECH