Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00470 ATGGGAAAGGTTCACCCCCAAGCACTACAATCCTCTACTACCTGCAAGCAAGAGACTTTTACCCTATGGATGAAATCTCTGGTACTGAATGGAAAGGGATGTACTGTCTTTGATTCAAATGGCCAAATTGCATACCGAGTTGATAACTACAACTGCAGGCATAGAGATGAAGTTCATCTCATGGATCAAAATGGCGATATTTTGTTTACTATGCTCAAAAAGCAATATAAGTTGTCCAGGTTTTGGGAGGGTTATAGATACCCAGCAACAAGAAATGACCACAAAGGACCATTCTTTCGAGTTTCTAAAACTTATAAGATCTCTAGAGGGGGTTCAACCTATGAAGTTGAACTTGGATTGGACAAAAGCCAACCATATACACATAAAATAGAAAGCAGCACTTGCAATTCAGCTTGCAAAATATCTAACGAGCTAGGAGTGGTAGTTACAGAGCTAAGGAGAAAGAAGTCACATTGTGGAGTTGATTTGGGAGACGATGTTTTCACAATGGTAGTGGAGCCAAATATAGATCTTTCCCTAATTATGGGGCTTGTTGTAGCGTATAGTCTTATCAACTGTAAAATTGTCCCATCGTGA 597 0.397 MGKVHPQALQSSTTCKQETFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNCRHRDEVHLMDQNGDILFTMLKKQYKLSRFWEGYRYPATRNDHKGPFFRVSKTYKISRGGSTYEVELGLDKSQPYTHKIESSTCNSACKISNELGVVVTELRRKKSHCGVDLGDDVFTMVVEPNIDLSLIMGLVVAYSLINCKIVPS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00470 198 PANTHER - 4 194 IPR007612 -
Cca11g00470 198 SUPERFAMILY Tubby C-terminal domain-like 16 192 IPR025659 -
Cca11g00470 198 PANTHER PROTEIN LURP-ONE-RELATED 11 4 194 - -
Cca11g00470 198 Gene3D - 11 194 IPR038595 -
Cca11g00470 198 Pfam LURP-one-related 15 186 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00470 Cca-Chr11 6542727 6544627 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00470 - K03239 gmx:100527543 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00470 11 6542727 6544627 Cca11g00470 11 6542727 6544627 ECH