Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00464 ATGTTAAGTACTATAGTTAAAAATGATGATGACACTCGTTTGAGAAACCTCAAAGGAAAACAGAAAGAAACTGATGAGTTGTCCCTATTCTTCTGTGGTATTTTCATGGATGCAAAACGTGGTGAAGAAATGTTCAGGAGCCAAAACTGTTCTCACTCTTTCTGTGATGATTGTTTTGGGAAATATGTGGCTGTAAAGATTCAAGAGAATATATATCAAAGGTCAAATGTCCTGACCCCAAATGCTAGGATGTTGTGGGGCCTCAGTATTGTCGTTCAATCAAACCTAAGAAAGTGGTTGAAAGATGGGAAAATGCTCTTTTGCAAGGTTTCATGGCATGCAGGAATAAACTGTGAGGAGTTTCAGAATTTGAAGCCTCATGAGAAGGAAAGGGAAGATCTAATGGTTATGGAACTTGCCAAGAGCAAAAGTTGGAAAAGATGTCCAAAATTCTATGTGGAAAAAGTCGCAGGATATGTGGCCATGAATTTTGCTATACCTGTGGAGCCTGTTGGAGTTATTACCAGAAATGCAGAAGGGGCAAGTGAAATTGGTAGAGTAGCATTGTGA 570 0.3912 MLSTIVKNDDDTRLRNLKGKQKETDELSLFFCGIFMDAKRGEEMFRSQNCSHSFCDDCFGKYVAVKIQENIYQRSNVLTPNARMLWGLSIVVQSNLRKWLKDGKMLFCKVSWHAGINCEEFQNLKPHEKEREDLMVMELAKSKSWKRCPKFYVEKVAGYVAMNFAIPVEPVGVITRNAEGASEIGRVAL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00464 189 SUPERFAMILY RING/U-box 28 73 - -
Cca11g00464 189 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 21 72 - -
Cca11g00464 189 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 108 163 - -
Cca11g00464 189 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 72 IPR031127 GO:0004842|GO:0016567
Cca11g00464 189 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 108 163 IPR031127 GO:0004842|GO:0016567
Cca11g00464 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00464 Cca-Chr11 6449562 6450425 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00464 K11975 - gmx:100816161 166.777