Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00451 ATGAGCAGAGTTGGTGATTCCTTGAACGTGGATTTGGCTGCTGCAGTGAACAACTTCTTCAATCTTCCTGAAACCATGGAGAAGTTCATGTTTCCTTCTTCTCGTGCCCATGATCACCATGAGACAAGAGGGATTTCTAGCATCCCAGTGGACATTTTGGACACTACCAATGAATATGTATTCTTCATGGATGTTCCTGGTCTCTCTAAATCTGGAATTCAGGTGACTGTTGAAGATGAGAACACGCTTGTTATTCGAAGCAACGGGAAAAGGAAGCGTCAGGATGGAGAGGATGAAGGGTGCAAGTATCTAAGGTTAGAGAGGAGAGGGCCTCAGAATTTGCTGAGGAAATTTCGTTTGCCTGAGAATGCCAATGTGTCTGCAATCACAGCTAAATGTGAGAATGGTGTTCTGACTGTGGTTGTTGGGAAGCACCCTCCTCCACCAAAATCCAAAACTGTGGAAGTTGCTATTGCTTGA 480 0.4479 MSRVGDSLNVDLAAAVNNFFNLPETMEKFMFPSSRAHDHHETRGISSIPVDILDTTNEYVFFMDVPGLSKSGIQVTVEDENTLVIRSNGKRKRQDGEDEGCKYLRLERRGPQNLLRKFRLPENANVSAITAKCENGVLTVVVGKHPPPPKSKTVEVAIA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00451 159 PANTHER 17.4 KDA CLASS III HEAT SHOCK PROTEIN 13 159 - -
Cca11g00451 159 CDD ACD_sHsps-like 51 144 - -
Cca11g00451 159 Pfam Hsp20/alpha crystallin family 51 156 IPR002068 -
Cca11g00451 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 159 - -
Cca11g00451 159 Gene3D - 10 158 IPR008978 -
Cca11g00451 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 159 IPR002068 -
Cca11g00451 159 SUPERFAMILY HSP20-like chaperones 29 152 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00451 Cca-Chr11 6196820 6199343 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00451 K13993 - gmx:100803161 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00451 11 6196820 6199343 Cca11g00451 11 6196820 6199343 ECH