Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00449 ATGCACGTGTTGAAGCCATTCTCATCCCAATCCCATCATTCACTACCCTCAACTCCCCTTTATAACCGAACCTTCCTTCACACCTTCCCATCATCAGTCATCACACCAACTCTTCTCCTAAAACTCATTGAGGCATTCATCAAACACCTTCCAAAGATGGCGAAAGTGGGAAAACTCACAAAGCTCAAGTCCGCTATCAAGAGATGGCCCTCATTGACCAAACTCAGCCGCAGTGTCTCTTCCAACAAGGAAAACCCCGCAACATCCTCTTCTTCCAAGGAACACGAAAACGATCTTCATGCTGTCTATGTCGGCAAGTCTAGGAGGCGCTACCTCGTAAACTCCGAAGTGATCGACCACCCTGTCTTTCAGGAGCTTGTGGACAGGTCCAGTGGCTGCGACGATGGGGTGGTGGTTTCGTGCGAGGTAGTGCTGTTCGAGCACTTGTTGTGGATGCTTGAGGGCGAAGAGACACAGTTGGGATCCATGGATGAGTTGGTCGAGTTCTACTCTTGTGCATGTTGA 525 0.4971 MHVLKPFSSQSHHSLPSTPLYNRTFLHTFPSSVITPTLLLKLIEAFIKHLPKMAKVGKLTKLKSAIKRWPSLTKLSRSVSSNKENPATSSSSKEHENDLHAVYVGKSRRRYLVNSEVIDHPVFQELVDRSSGCDDGVVVSCEVVLFEHLLWMLEGEETQLGSMDELVEFYSCAC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00449 174 Pfam Auxin responsive protein 67 153 IPR003676 GO:0009733
Cca11g00449 174 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 56 172 IPR003676 GO:0009733
Cca11g00449 174 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR78 56 172 - -
Cca11g00449 174 MobiDBLite consensus disorder prediction 77 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00449 Cca-Chr11 6182610 6183503 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00449 - - gmx:100797158 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00449 11 6182610 6183503 Cca11g00449 11 6182610 6183503 ECH