Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00430 ATGAGCGTGTTGGCTGGGAAACGCAAGCGCCAGGACTTGGCTTCGTCGCTATCTGCAACACTGAGCAACGAGGAGCGCGTTGTGTACAACATCATTAGGGGTAGGAAGGAGATGGGGATATGGCAGGGAGACATAAAGCGAGAAACCAACATCCCCGATAGCCTCATGAAGAAATCCATCAAGATGCTTCTCACCAAGACCCTCATCAAGGAGGTCGTCAACATCCAAAACAAGTCCAAGAAGGTGCTCATGGCAGTGGAATTTGAACCCTCCAAGGAGATCACTGGTGGGGAGTGGTACACTGAGGGCAAACTTGACACGCAGTTAATCGAAGCCCTGTCTGATGTTTGTATGAAGCTCATTCTTCGCCAGAAAGTCGCCACACGCGAGGGGATCCTTGACTGGATTAGGAAGGTTGGGAGTGAGATTTTCCCTGGTGGAGTCAGTGCAGGGCAGGTGGAACAGATTTTGAAGGTTTTGGTTATGGAGAACAAGGTGCAGGAGGTGAATAGTACCGGCTTTGGGGATTTTGCTTCTGTGCCTGTTGGTGAAGTTTGTTATAGATTGGCTAAGAAGACTGGTGGTGAGGTCAAAGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCAAGGATTAATGCTTGTACACCCGATGAAAAGAATGGCATCAACATTTTAATATGTTGTGACAAAGATCAAGGGTTGAGCAAGGAGAAGTCATCCAATGGATTTATTCATTACTTTGATCGCAGATATGCTGCTCTTGCCATACTATCTCTCAATGGGAGGCATCTATTTGGCCAACCTATCAAAGTGAATTGGGCATATGCTAGTGGTCAAAGGGAGGATACATCAGGTCATTACAACATACAACATATTTGTTGGTGA 891 0.468 MSVLAGKRKRQDLASSLSATLSNEERVVYNIIRGRKEMGIWQGDIKRETNIPDSLMKKSIKMLLTKTLIKEVVNIQNKSKKVLMAVEFEPSKEITGGEWYTEGKLDTQLIEALSDVCMKLILRQKVATREGILDWIRKVGSEIFPGGVSAGQVEQILKVLVMENKVQEVNSTGFGDFASVPVGEVCYRLAKKTGGEVKVGAMASIPCGVCPRINACTPDEKNGINILICCDKDQGLSKEKSSNGFIHYFDRRYAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIQHICW 296
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00430 296 Gene3D - 2 80 IPR036388 -
Cca11g00430 296 SUPERFAMILY "Winged helix" DNA-binding domain 17 87 IPR036390 -
Cca11g00430 296 Pfam RNA polymerase Rpc34 subunit 18 128 IPR007832 GO:0005666|GO:0006383
Cca11g00430 296 Gene3D - 222 291 IPR012677 -
Cca11g00430 296 PANTHER RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED 11 219 IPR016049 -
Cca11g00430 296 SUPERFAMILY RNA-binding domain, RBD 225 285 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca11g00430 Cca-Chr11 5960731 5962425 Dispersed/Proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00430 K03025 - gmx:100789276 327.02