Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00423 ATGTTTTTTCCTTTGGTTGTGAGCACAGATCATGCAAAACAAGAGCCTCGAGAAGAATTCAGCGATTGGCCTCATGGTTTACTAGCAATAGGAACATTTGGAAATAACAGTGAAATCAAAGAAAACTTGGATGACCAAAACACACAAGAGGATCTATCTTCATCAGAGGAAATAGCAGACTTCACTCCTGAAGAAATTGGGAACCTGCAGAAGGAGTTAACTAAACTTCTTAGACGAAAACCGAATGTGGAAAAGGAAATTTCTGAGCTTCCTCTGGACAGGTTTCTTAACTGCCCTTCAAGCTTGGAGGTTGATAGGAGAATCAGCAATGCTCTATGCAGTGAATCAGAAGATAAAGAAGAAGATATTGAGAAGACACTCAGTGTCATACTTGATAAATGCAAAGACATTTGTGCAGATAACAGAAAGAAAGCCATTGGAAAGAAATCTATTTCTTTCCTACTGAAGAAGATATTTGTTTGTAGGAGTGGATTTGCTCCTGCACCTAGCCTTATAGATACCCTTCAAGAATCAAGAATGGAGAAGCTGTTGAGGACAATGCTTCACAAGAAAATTTACACCCAAAATTCTTCTCGGGCATCATTGATGAAGAAGTGCTTAGAGGACAAGAAGAGTACAAGGAACAGGAGTGAAGATGAATCAGATGAGAGAAGTGGTGATGGCTGCAAATGGGTCAAGACTGATTCTGAATTGTTATTGTTCTTCCTCAAGCTCCATCCATTGTCCAATCTAGCTCTTGGAGGTTCATCAATGGTTGAAAATGGCATAAGCAAGACAAGCCTCAAAGCTTGTAGAAGCCACTCAAGTGGTTTGGTTCTTCTTATAGGAGAAAAAGAAGTGAGAAACCAAGGCACAAAGGAGAAAGTCCTTTGTGAAGACCGTACAAACCAACCCCGGTTGGCAGAAGCTGCAGCTCCCTTCTGGATCTATCCCAAATCTGAATCTCCAAACCCTAAACCTAAACTAAAGTCTCACCCTTTCCACTCCCCCCCTGCGATTGCATCTCTTGGGTTTCTTCCTTTCCGCGATTTCAATCTGAAACCTGAGGTTGTGGAATTCAAATACCGAAAACACACAATGTCTTGGGCAGGCCCTGAGGATATTTACCTCTCGACTTCACTAGCCAGCTATCTTGATAAGAAACTTCTTGTATTACTGAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCGGTTCTTGAAGGGGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATACCTTTGGGTCTCTATGTGATTCGTGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACATATGACACGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCTTCAGATCTGAAAGGAACTATGAGGAAAAGAATGGAATTCCTTGACTTGGAGTAA 1485 0.4195 MFFPLVVSTDHAKQEPREEFSDWPHGLLAIGTFGNNSEIKENLDDQNTQEDLSSSEEIADFTPEEIGNLQKELTKLLRRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCSESEDKEEDIEKTLSVILDKCKDICADNRKKAIGKKSISFLLKKIFVCRSGFAPAPSLIDTLQESRMEKLLRTMLHKKIYTQNSSRASLMKKCLEDKKSTRNRSEDESDERSGDGCKWVKTDSELLLFFLKLHPLSNLALGGSSMVENGISKTSLKACRSHSSGLVLLIGEKEVRNQGTKEKVLCEDRTNQPRLAEAAAPFWIYPKSESPNPKPKLKSHPFHSPPAIASLGFLPFRDFNLKPEVVEFKYRKHTMSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDLE 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00423 494 CDD LSm1 378 448 IPR034104 GO:0000956
Cca11g00423 494 SUPERFAMILY Sm-like ribonucleoproteins 379 449 IPR010920 -
Cca11g00423 494 Coils Coil 66 86 - -
Cca11g00423 494 Gene3D - 378 491 - -
Cca11g00423 494 SMART Sm3 379 447 IPR001163 -
Cca11g00423 494 PANTHER OS03G0406300 PROTEIN 9 239 IPR044683 GO:0009630|GO:0040008
Cca11g00423 494 Pfam LSM domain 380 446 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00423 Cca-Chr11 5801287 5813008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00423 - - gsj:114417729 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00423 11 5801287 5813008 Cca11g00423 11 5801287 5813008 ECH