Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00422 ATGTTTCCAACATACATTCATTTTGTGATTGTTGTTCGTTCTTTCAGTTTCATTCTTCAAATGAGACCCCCTTTTGTTGGATCAACAATACTTGTGCTTTCTCTTTTCGTCTGTTCTTCTACCGATGGAAATATTAAAACGGAGAAAACCTTGGCAATTATAAAACCAGACGGATTGCTTGGTAACTACACAGATGATATTAAGAAAACAATTGTAGAATATGGTTTCAGAATTTTTAAGGAAAAGATTGTTCAACTTGATGAGGCCACTGTGAAAAGTTTTTATGCTGAGCACTCTTCAAAAAGCTTCTTTTCCAGCCTTATAAAATACATGACAAGTGGACCGGTGTTAGTTATGGTCTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCTTTAATGGGCCCTACAGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGTGGATTGGATATGCAAAAGAATGGGGTTCATGGTTCAGACTCTCCCAAATCTGCACAAAGAGAGATACCATTTTTCTTCAATGAGCTCTCTGCAGAGCACGATGAGTTGTAG 573 0.3822 MFPTYIHFVIVVRSFSFILQMRPPFVGSTILVLSLFVCSSTDGNIKTEKTLAIIKPDGLLGNYTDDIKKTIVEYGFRIFKEKIVQLDEATVKSFYAEHSSKSFFSSLIKYMTSGPVLVMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKCGLDMQKNGVHGSDSPKSAQREIPFFFNELSAEHDEL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00422 190 Gene3D - 46 189 IPR036850 -
Cca11g00422 190 SMART ndk_5 47 187 IPR034907 -
Cca11g00422 190 PRINTS Nucleoside diphosphate kinase signature 94 113 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g00422 190 PRINTS Nucleoside diphosphate kinase signature 50 72 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g00422 190 PRINTS Nucleoside diphosphate kinase signature 161 180 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g00422 190 PRINTS Nucleoside diphosphate kinase signature 114 131 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g00422 190 ProSitePatterns Nucleoside diphosphate kinases active site. 161 169 IPR023005 -
Cca11g00422 190 Pfam Nucleoside diphosphate kinase 48 182 IPR034907 -
Cca11g00422 190 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 29 186 - -
Cca11g00422 190 SUPERFAMILY Nucleoside diphosphate kinase, NDK 46 183 IPR036850 -
Cca11g00422 190 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 29 186 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00422 K20790 - gmx:100500470 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00422 11 5779894 5782472 Cca11g00422 11 5779894 5782472 ECH