Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00420 ATGTTTAAACTTGTGTGTTCATTTGTAATGCAGATTTTGAAACCAGCTTTTACAATAATAGCTGATCATGACATGAGATGCCTTTTGTTATTGATTCGTGGCACACATAGTATCAAGGATACTCTCACAGCTGTTACAGGAAATGTTGTACCATTTCATCACACTGTTGTTCATCAGGGGGGTGTCAGTGATTTGGTTTTAGGTTATGCACATTGTGGAATGGTTGCTGCTGCTCGATGGATTGCAAAGCTTGCAACTCCTTGTCTCCTTGAAGCACTTGGCCACTACCCTAACTATAAAGTTAAGATTGTAGGGCACTCTTTGGGTGGAGGCACTGCAGCAATTCTAACTTATGTTTTGAGAGAGAGAAAGGAACTGTCTGTCGCCACATGTGTTACATTTGCTCCAGCTGCTTGTATGACATGGGAGTTGGCAGAGTCTGGCGATAGTTTTATTACATCTATTATAAATGGAGCTGATCTGGTGCCTACATTCTCAGCTGCTTCTGTAGATGACTTGCGTTCTGAGgtgactgcatcagcatggataaatgacttgaggaatcaaattgaacaaacaagaatactcagtactgtctatcgttctgcttcagctttaggttctcgcctgccatcgattgccactgctagagcaaaagttgctggggctggggccattttgcagccagtttctaatggcacccagGTTGTGATGAAGAGAGCTAAGAGTATGGCTCAGGCAGCATGGACACGTCCAAATCTCAATTTATCCTCTTGGTCATGCATGGGACCTCGTCGCAGAGTCTTGAGTGGTCATTCAAACTCCAAAGATGGGGGAAGTTCCCCTACATCTTCTACCTCTAGCATTGTTGAAAGTTCTGAACCGCTTCTTGGTTCTCCCACAAAGGCGATTAATGCAAAGAACATGAACCTTCCTGTATCTTCATCTATAGAAGAGTGGTCTTCTGAGATTGAATGTGGCAATGGAAGCAATCCTGATGCTGAGGTGgatgttgatcacgatgacattgagaacatgatggaccatgacagatacgaggatcagatgaGTGAAGTGGAGTTGTGGCAACAACTGGAGCATGAGCTATATGATGGACCTGAAGGCGAGGAGACTGATGTTGTAAAGGAGATAAGGGAAGAGGAAGCAGCCATAGCAGAGGAAGTAGGGCAAACCCAGAGCTCTGCACCAGAAATAAAAGAAGTCCACAGATTTTTCCCTCCAGGAAAGATAATGCACATTGTTACACTCCACTCTGACATCGCCGAGCATGAAAATGATGGTAGCCCCACCTCTGTAAGTTCAGATAATAGCCAGCTAAGTGAGGCTAAGATTGGGATTTTTCTAACTTCAAGGTCTCTATATAGTAAACTTAGACTTTCACAGAGAATGATCAGTGATCACTTCATGCCAGTTTATAGAAGGCAAATTGAGAGGCTAATAAAAGAACTTGAGGAAGAATCTATTGAGGATCACAATACACAAGAGGTAGTGTTATAG 1518 0.3617 MFKLVCSFVMQILKPAFTIIADHDMRCLLLLIRGTHSIKDTLTAVTGNVVPFHHTVVHQGGVSDLVLGYAHCGMVAAARWIAKLATPCLLEALGHYPNYKVKIVGHSLGGGTAAILTYVLRERKELSVATCVTFAPAACMTWELAESGDSFITSIINGADLVPTFSAASVDDLRSEVTASAWINDLRNQIEQTRILSTVYRSASALGSRLPSIATARAKVAGAGAILQPVSNGTQVVMKRAKSMAQAAWTRPNLNLSSWSCMGPRRRVLSGHSNSKDGGSSPTSSTSSIVESSEPLLGSPTKAINAKNMNLPVSSSIEEWSSEIECGNGSNPDAEVDVDHDDIENMMDHDRYEDQMSEVELWQQLEHELYDGPEGEETDVVKEIREEEAAIAEEVGQTQSSAPEIKEVHRFFPPGKIMHIVTLHSDIAEHENDGSPTSVSSDNSQLSEAKIGIFLTSRSLYSKLRLSQRMISDHFMPVYRRQIERLIKELEEESIEDHNTQEVVL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00420 505 Gene3D alpha/beta hydrolase 1 203 IPR029058 -
Cca11g00420 505 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 11 491 - -
Cca11g00420 505 SUPERFAMILY alpha/beta-Hydrolases 2 167 IPR029058 -
Cca11g00420 505 Coils Coil 476 496 - -
Cca11g00420 505 CDD Lipase_3 22 166 - -
Cca11g00420 505 MobiDBLite consensus disorder prediction 273 303 - -
Cca11g00420 505 Pfam Lipase (class 3) 30 167 IPR002921 GO:0006629
Cca11g00420 505 MobiDBLite consensus disorder prediction 267 303 - -
Cca11g00420 505 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 11 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00420 Cca-Chr11 5745397 5751559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00420 12 498 Acyl Lipid Metabolism Gene Families AT3G14075 62.097 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00420 - - gmx:100807086 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00420 11 5745397 5751559 Cca11g00420 11 5745397 5751559 ECH