Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00410 ATGGCCCTTACTAAACAAATCATGGGTTCTTCATTGCTAGAGAGGTCCTTCTTTGTTCCTTCTACCTCTTCATCTTTTCAGCTCAACCAAACCCGCTTCTTAGTTCCTTTGGACAAGGAAAAAGTTTTGAGGGTGAGGAAGGATGCAAAGTTTCCTGTGGCAGCTATAAGTGAGGATTTGGTGAAGGGttcttcttcttctcctccttctccttcatctgcttcctctacttctcttGTGTCAACTGAGAAGCCAGTGAAATTCAAGGTCAGAGCTGTGATCACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACCATTGTGAAGCATATTGATGCCATAACTGACAGGATTGGAAGAAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGCAGTGAAGCTGTTTTGAAGGATTGGGCCAAGAAGTCCAATGTTAAGGCTGAGAGAGTTAATTACACTGCTGAATTCATAGTTGACTCTAGTTTTGGGGAACCAGGGGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACCATTGAAGGATTTGCTAGTGGACCTGTTCATTTCCCCTGCAACTCATGGGTACAAGCCAGAAAAGATCATCCAGGAAAGAGGATTTTCTTTTCCAATAAGCCTTATTTACCCGGAGATACACCTGCTGGGCTTAGATTGTTGAGGGAGAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTTAGAAAGTTATCTGACAGAGTATATGACTATGACATATACAATGATTTGGGAAATCCAGATAAAGGAATTGATCTAGCTAGACCAAATCTTGGAGGATCAGATATGTATCCTTACCCAAGACGGTGTCGTACTGGCCGTGAACCATCTGATACAGATATGTATGCTGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGAGATGAACGTTTTGAGGAGTCTAAGCAGAACACATTCTCTGTGAAAAGGCTGAAGGCAGTGTTGCATAACTTGATCCCAGGTCTTAAGGCTAGTCTTTCTGCTAACAACCAAGACTTCAATGAATTCAAAGATGTTGATGGACTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTTGCAAGATGACATGTTGAAGAAAATTCCTTTTGTCAGCAAGATCCAAGAATCTAGCCAGGGACTTCTTAAGTATGACACTCCTAAGATTATTTCCAAGGACAAATTTGCGTGGCTGCGAGATGACGAATTTGCCCGTCAAACAATTGCAGGAGTGAACCCTGTCAACATTGAGAGCCTTAAAGTTTTCCCACCTGTTAGCAAACTAGACCCCGAAATTTATGGTCCCCCTGAGTCTGCTCTTAAAGAAGAACACATTTTAAGTCAACTCAATGGCATGACTGTCCAAGAGGCAATAGACGAAAATAAGCTGTTTATCATTGATTATCATGATATTTACCTTCCTTTCCTAGAAGGGATCAATGCCCTTGATGGTAGAAAATCATATGCGACACGCACCATTTTTTTCTCGACACCCCGTGGCGCTCTCAAGCCTGTGGCTATAGAACTTAGCTTACCTCCTGCTGGACCTAGTTCGCGTTCAAAGCGCGTGGTTACACCTCCTGTTGATGCAACTACTAATTGGATGTGGCAGCTTGCCAAAGCCCATGTTTGCTCCAATGATGCCGGGGTACACCAACTTGTTAATCATTGGTTACGCACACATGCCTGCATGGAACCATTTATATTGGCTGCTCATAGGCAATTGAGTGCTATGCATCCAATTTTCAAGCTATTGGACCCTCACATGAGGTACACGTTGGAGATCAATGCCTTGGCTAGACAGGGTTTGATCAATGCTGATGGAATCATTGAAAATTGCTTCACTCCTGGTCGCTACGCCATGGAGATTAGTTCTGCTGCTTACAAAAACATTTGGCGCTTTGACATGGATAGCCTCCCTGCAGATCTCATCCGCAGGGGAATGGCTGTACCTGACTCAACACAGCCACATGGTCTAAAGCTAATATTGGAAGACTACCCCTATGCAGCTGATGGAATACTAATTTGGTCTGCCATAGAAGACTGGGTTCGTACCTATGTGAACCATTACTACCCTCACTCAAGCCTGATATGCAATGACAAAGAGTTACAATCATGGTACTCTGAGTCAATCAACGTAGGCCATGCTGATCTTAGGCATGAAAGTTGGTGGCCCACATTGAACAACAGTGAGGATCTTGTTTCCATTCTTTCCATCTTGATTTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGTCAGTACCCTTATGGGGGCTATGTGCCAAACCGTCCACCACTAATGAGGAGGCTAATACCTGAAGAGAGTGATCCAGAATATGCAAGTTTCCTTGCTGACCCTCAAAAGTATTTTCTGAATGCATTGCCTAGCTTGTTGCAAGCCACAAAGTATATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGGGAGAGGCAACAACCTTCTATTTGGTCTGGTGATGCTGAGATCATTGAGGCCTTCTATGATTTCTCTGCAAAGATTAGGCAGATAGAGAAGGTGATTGATGGCAGGAACCTTGACAGGAATCTAAGGAACCGTTGTGGTGCAGGGGTGTTGCCTTATGAGTTACTTGCTCCTAGCTCTGAACCTGGTGTCACATGCAGAGGGGTACCCAATAGTGTGTCCACATAA 2769 0.4323 MALTKQIMGSSLLERSFFVPSTSSSFQLNQTRFLVPLDKEKVLRVRKDAKFPVAAISEDLVKGSSSSPPSPSSASSTSLVSTEKPVKFKVRAVITVRNKIKEDFKETIVKHIDAITDRIGRNVVLELVSTEIDPKTKAAKKSSEAVLKDWAKKSNVKAERVNYTAEFIVDSSFGEPGAITVTNKHQKEFFLESITIEGFASGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRKLSDRVYDYDIYNDLGNPDKGIDLARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFSVKRLKAVLHNLIPGLKASLSANNQDFNEFKDVDGLYSEGLLIKLGLQDDMLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQTIAGVNPVNIESLKVFPPVSKLDPEIYGPPESALKEEHILSQLNGMTVQEAIDENKLFIIDYHDIYLPFLEGINALDGRKSYATRTIFFSTPRGALKPVAIELSLPPAGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQGLINADGIIENCFTPGRYAMEISSAAYKNIWRFDMDSLPADLIRRGMAVPDSTQPHGLKLILEDYPYAADGILIWSAIEDWVRTYVNHYYPHSSLICNDKELQSWYSESINVGHADLRHESWWPTLNNSEDLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYASFLADPQKYFLNALPSLLQATKYMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIIEAFYDFSAKIRQIEKVIDGRNLDRNLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00410 922 Gene3D - 420 553 - -
Cca11g00410 922 Pfam PLAT/LH2 domain 147 225 IPR001024 GO:0005515
Cca11g00410 922 Gene3D PLAT/LH2 domain 75 230 - -
Cca11g00410 922 Gene3D - 555 921 - -
Cca11g00410 922 ProSiteProfiles PLAT domain profile. 104 226 IPR001024 GO:0005515
Cca11g00410 922 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 229 922 IPR013819 GO:0016702|GO:0046872
Cca11g00410 922 ProSitePatterns Lipoxygenases iron-binding region signature 1. 576 590 IPR020833 GO:0016702|GO:0046872
Cca11g00410 922 CDD PLAT_LH2 88 227 IPR042057 -
Cca11g00410 922 PRINTS Plant lipoxygenase signature 196 214 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 222 243 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 261 277 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 294 313 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 362 383 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 407 423 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 446 465 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 513 537 IPR001246 GO:0016491
Cca11g00410 922 PRINTS Plant lipoxygenase signature 834 848 IPR001246 GO:0016491
Cca11g00410 922 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 88 230 IPR036392 GO:0005515
Cca11g00410 922 PRINTS Lipoxygenase signature 558 575 IPR013819 GO:0016702|GO:0046872
Cca11g00410 922 PRINTS Lipoxygenase signature 576 593 IPR013819 GO:0016702|GO:0046872
Cca11g00410 922 PRINTS Lipoxygenase signature 596 616 IPR013819 GO:0016702|GO:0046872
Cca11g00410 922 SMART LH2_4 88 227 IPR001024 GO:0005515
Cca11g00410 922 Gene3D - 334 419 IPR027433 -
Cca11g00410 922 ProSitePatterns Lipoxygenases iron-binding region signature 2. 603 613 IPR020834 GO:0016702|GO:0046872
Cca11g00410 922 SUPERFAMILY Lipoxigenase 232 921 IPR036226 -
Cca11g00410 922 Pfam Lipoxygenase 239 905 IPR013819 GO:0016702|GO:0046872
Cca11g00410 922 Gene3D - 231 333 - -
Cca11g00410 922 PANTHER LIPOXYGENASE 27 921 IPR000907 GO:0016702|GO:0046872
Cca11g00410 922 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 27 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00410 Cca-Chr11 5628318 5634978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00410 1 921 Acyl Lipid Metabolism Gene Families AT1G17420 72.091 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00410 K00454 - gmx:100793614 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00410 11 5628318 5634978 Cca11g00410 11 5628318 5634978 ECH