Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00407 ATGGCGGTTTCCACCATAGCGCTATACGCGAGTCCACCGAGCAGCGTCTGTTCCACGCCGCATCCTTGCCAGATCAACGCTCACGCCTCCTACGACTTCGAATTGGGGTCGCGATCTTCGTCGCCGGCGTCGACGGCGCCGCCGTCAACGTCTCAGAAGCCGGTGATGGGAGGGCTCTCGTGCCTGTTCTCATCTCCGGCGGCGGCGGTGAAGCACGCGCCGCTGTCGTCGAACTTTTCCGGCGAGGAGGACGAGTTGAAGGAACTGGGCAGTTCCTTCTCGTATTCTCCGAGCAAGTTTGGCGGAGGGTCGTCGTGGAAGAGGGATCAGAGTCCCGTGTCGGTTTTTCATGGCCCCGTTTCGTGTAGCAGTAGCAGCAGAAGTTCCACCCCGGTTAGGGTTAGGGGTGGGACTAGTGGGTTGTTTGATGGGTTTGTGAGGAATGCGTTGGGGTCTTCTTGTTTGGACTATGACTTAGATGCTGCTGACTCTTCTGCTGCTCTTGTGGATGAGTTGACCTTCAATTTGGAGGACACTTTCGTGGAGGGTGGGTTTGAGTTTGAGCCCTACGCCAAGAAGTTGCTTCTGGGGGCTCAGTTGAGGCACAAGATCTTCTGTGAGGAGTTTGTCATCAAGGCCTTTTGTGAAGCTGAGAAAGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCTGCATTGTTTAGAGACTGCTGTGTTGCTGGCTTTGATTGGTGCCAATTCCACTGTTGTGGCTGCGGGTCTCTTGCATGACACGCTGGATGACGCCTTTCTGACTTATGATTATATATTTGGGATGTTTGGCGCTGGAGTTGCTGATTTGGTTGAAGGGGTTTCTAAACTGAGCCACTTGAGCAAGCTGGCTCGAGAAAATAATACAGCTAGCAAGTCAGTAGAAGCAGACCGATTGCATACCATGTTCCTTGCCATGGCAGATGCTAGAGCTGTCCTCATTAAATTGGCTGATAGGTTACATAATATGATGACACTAGATGCATTGCCAGTGGCCAAGCGACAGAGGTTTGCAAAGGAGACTTTGGAGATATTCGCACCCTTGGCCAATCGATTAGGAATTTCTAGTTGGAAGGAACAGTTAGAAAACTTGTGTTTTAAGCATCTCAACCCAAGCCAGCATGAGGAGCTTTCGTCTAAGCTTGTGGAATCATATGATGATGCAATGATTACTTCTGCAATTGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATATCTTATAATGTCATTTCTGGACGGCACAAGAGCTTGTATAGCATTTATTGCAAAATGCTAAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTACAAGGCCTTAACAATTGTTCATCGGTTATGGTCTGAGGTACCTGGAAAGCTGAAAGATTACATCTGTCATCCCAAATTCAACGGATATCAATCTCTGCATACTGTGGTGACGGGTGAAGGAAAGGTTCCCCTTGAAGTACAAATTCGCACCAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATATAAGGAAGATGATTGTCAGCATTCTTCTTTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCGTTCAAGCCCCCATGCAAGTTCCCTTCCCATGCTGCTGATTGTCCATATTCTTATAAGCCCGATTGTGGTCAGGATGGGCCAGTGTTCATTATCATGATTGAGAATGATAAGATGTCTGTCCAAGAATTTAGTGCAAACTCAACAGTACTGGATTTGTTGAAAAGAGTTGGACGTGCAAGCTCCAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAGTTGAGGCCAAGGCTGAATCATAAGCCTGTTAGTGACCCCAATAGCAAGTTGAAGATGGGAGATGTGATTGAACTTACACCAGCCATACCTGACAAGTCTCTCACAGAATATAGGGAAGAAATCCAGCGTATGTATGACCGAGGACTAACTGTTTCAAGCACGGGAACTGGTGCAAGCACCATGGTTGGATCAAGAAGTTGA 2139 0.4759 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPASTAPPSTSQKPVMGGLSCLFSSPAAAVKHAPLSSNFSGEEDELKELGSSFSYSPSKFGGGSSWKRDQSPVSVFHGPVSCSSSSRSSTPVRVRGGTSGLFDGFVRNALGSSCLDYDLDAADSSAALVDELTFNLEDTFVEGGFEFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLLHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITSAIERLEQALKDEGISYNVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTIVHRLWSEVPGKLKDYICHPKFNGYQSLHTVVTGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSFKPPCKFPSHAADCPYSYKPDCGQDGPVFIIMIENDKMSVQEFSANSTVLDLLKRVGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKSLTEYREEIQRMYDRGLTVSSTGTGASTMVGSRS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00407 712 Gene3D Beta Polymerase, domain 2 386 516 IPR043519 -
Cca11g00407 712 SUPERFAMILY HD-domain/PDEase-like 193 383 - -
Cca11g00407 712 SMART RelA_SpoT_2 426 536 IPR007685 GO:0015969
Cca11g00407 712 CDD HDc 230 358 IPR003607 -
Cca11g00407 712 Pfam HD domain 217 367 - -
Cca11g00407 712 Gene3D Hypothetical protein af1432 199 383 - -
Cca11g00407 712 ProSiteProfiles S4 RNA-binding domain profile. 650 686 - -
Cca11g00407 712 ProSiteProfiles HD domain profile. 232 336 IPR006674 -
Cca11g00407 712 PANTHER - 1 712 - -
Cca11g00407 712 CDD NT_Rel-Spo_like 406 524 IPR007685 GO:0015969
Cca11g00407 712 SMART hd_13 228 345 IPR003607 -
Cca11g00407 712 Pfam Region found in RelA / SpoT proteins 426 535 IPR007685 GO:0015969
Cca11g00407 712 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 712 - -
Cca11g00407 712 SUPERFAMILY Nucleotidyltransferase 373 562 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00407 Cca-Chr11 5519835 5524616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00407 236 533 EF-hand Containing Proteins AT3G17470 30.625 8.83e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00407 K00951 - gmx:100787301 1298.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00407 11 5519835 5524616 Cca11g00407 11 5519835 5524616 ECH