Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00400 ATGCTTCTCCACATTGTTTTCCTCCTTTCCCTTCTCTTATCCACATCCAATGCCTCAGTCCAAGACTTCTGTGTGGCAGACCTAAAGGGTGCAGATGGCCCTGCAGGCTTTCCATGCAAGGCACCAGCAACAGTAACTTCAGATGACTTTGTGTATCCTGGCTTGGCTGAAGCTGCAAATGTCACAAACATAATCAATGCTGCTGTGACACCAGCATTTGTTGGCCAATTCCCTGGTGTCAATGGCCTTGGTCTCTCAGCAGCAAGGTTAGACCTTGGTCCTGGTGGAGTTATCCCACTTCACACTCACCCTGGTGCCAATGAACTACTAGTGGTGATTCATGGCCACATCACTGCTGGATTCATATCATCAGCTAACATAGTTTATGAGAAGACACTGAAAAAGGGAGAGCTCATGGTTTTCCCACAAGGGTTGTTGCACTTTCAAGTTGCAGCTGGCAAGAAGAGTGCCCTTGCTTTTGCTATCTTCAGTAGTGCAAACCCTGGCCTCCAAATCCTTGACTTTGCACTGTTTGCCAGCAACTTCTCCACTCCTTTGGTGACAAAGACTACTTTCCTTGACCCTGCCCTAGTGAAGAAGCTTAAAGCTGTTCTTGGGGGTAGTGGGTTTCTTGCTCATTGA 642 0.4766 MLLHIVFLLSLLLSTSNASVQDFCVADLKGADGPAGFPCKAPATVTSDDFVYPGLAEAANVTNIINAAVTPAFVGQFPGVNGLGLSAARLDLGPGGVIPLHTHPGANELLVVIHGHITAGFISSANIVYEKTLKKGELMVFPQGLLHFQVAAGKKSALAFAIFSSANPGLQILDFALFASNFSTPLVTKTTFLDPALVKKLKAVLGGSGFLAH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00400 213 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
Cca11g00400 213 Pfam Cupin 55 195 IPR006045 -
Cca11g00400 213 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Cca11g00400 213 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Cca11g00400 213 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Cca11g00400 213 Gene3D Jelly Rolls 16 208 IPR014710 -
Cca11g00400 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 205 - -
Cca11g00400 213 SMART Cupin_1_3 53 199 IPR006045 -
Cca11g00400 213 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Cca11g00400 213 CDD cupin_OxOx 16 205 - -
Cca11g00400 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00400 Cca-Chr11 5443328 5444064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00400 2 209 Miscellaneous Gene Families AT1G72610 68.269 1.68e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00400 - - gmx:100816355 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00400 11 5443328 5444064 Cca11g00400 11 5443328 5444064 ECH