Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00399 ATGGTTCTCATTATTCTTTTCCTTTCTGCTATTCTTTCATCCCCTTCCCTTGCCTCTAGTGCGAACGATTTGTGTGTGGCAGACCTGAAGGGCCCACAAAGCCCTTCAGGTTATAACTGCAAGCCACGAAACACAGTAATAACAGATGACTTTGTGTCTAACTTAAAAGACAGCCCAAGCGCGTTCGTTACTGATATGCCTGGTCTCAATGGTCAAGGTATCGGTTTAGCACGTGCAGAACTGGTTCCTGGTGGAATGTTTGGGATGCACACTCATCCTGGTGCCTGTGAACTCATAATCGTGGAGAAAGGTGAAATAACTGTTGGATTCATGAGTTCTAGGGAAGCTTACGTGAAAACGCTGAAAGTGGGAGATGTTATAGCTATCCCACGAGGACTGTTGCATTTTGTTTTGAATACTGGTAACGAGAATGGCACTATCACTGCATTTTATGGCAGCGAAAACCCTACTTTCCAATATCTTGGTAACCAATTATTTGGAACCGACGTGGCTTCTGATATAATTGCACAAACTACCCCCATTGACATGTCTCAAGTCATCAAGCAGAAGGCTCTTTTCGGTGGCACCGGCTAG 594 0.4478 MVLIILFLSAILSSPSLASSANDLCVADLKGPQSPSGYNCKPRNTVITDDFVSNLKDSPSAFVTDMPGLNGQGIGLARAELVPGGMFGMHTHPGACELIIVEKGEITVGFMSSREAYVKTLKVGDVIAIPRGLLHFVLNTGNENGTITAFYGSENPTFQYLGNQLFGTDVASDIIAQTTPIDMSQVIKQKALFGGTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00399 197 PANTHER GERMIN-LIKE PROTEIN 11 193 - -
Cca11g00399 197 SUPERFAMILY RmlC-like cupins 22 183 IPR011051 -
Cca11g00399 197 SMART Cupin_1_3 53 187 IPR006045 -
Cca11g00399 197 ProSitePatterns Germin family signature. 85 98 IPR019780 GO:0030145
Cca11g00399 197 Pfam Cupin 61 167 IPR006045 -
Cca11g00399 197 PRINTS Germin signature 90 110 IPR001929 GO:0030145
Cca11g00399 197 PRINTS Germin signature 119 139 IPR001929 GO:0030145
Cca11g00399 197 PRINTS Germin signature 152 167 IPR001929 GO:0030145
Cca11g00399 197 CDD cupin_OxOx 23 193 - -
Cca11g00399 197 Gene3D Jelly Rolls 18 197 IPR014710 -
Cca11g00399 197 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00399 Cca-Chr11 5426868 5427461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00399 1 196 Miscellaneous Gene Families AT5G20630 41.148 8.30e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00399 - - ccaj:109812612 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00399 11 5426868 5427461 Cca11g00399 11 5426868 5427461 ECH