Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00398 ATGAAGAATATGGTTCTCATTCCATTCCTTTTGGCTCTTCTTTCATTCACATCACATGCTACTGATGATAAAGTAAATAATTTCTGTGTAGCAGACCTCAAGGGTCCAAATAGCCCTTCTGGCTATCAGTGCCTGCCACCTAATAGTTTGACAGTAGATAACTTTGTGTTCAGCCTTCCAGTTTCAAACACCTCAAACCCTATCAAAACAGGAATTAGCTCTGCGTTTGTTAACGACTTTCCTGCTCTCAACGGTCTTGACATCTCTGCATTAAGTGTGATTATGGATAGTGGTGGATATATTCCAATGCACACACATCGCGGTGCCACTGAACTAATAATCATGGTGGAAGGTCAAATGACTGCTGGATTCTTAACACATGATGCATCTTATGTGAAGACATTGAAACCGGGAGATCTTATGGTTATTCCACGAGGACTTATGCATTTTGTAGCAAATTATGGGAAGGACAAAGTGGTTGCTTTTGCTGCTTTTAGTAGCTCAAACCCTGGTATTCATTCATTTAATGATATATTCTCCAACAACCTACCTTCTGACATACTTGCACAGACTACCTTCCTTGATGTTGCGCAAGTGAAGAAGCTTAAGGATCGTTTCCATGGCAGTGGTTAG 633 0.4076 MKNMVLIPFLLALLSFTSHATDDKVNNFCVADLKGPNSPSGYQCLPPNSLTVDNFVFSLPVSNTSNPIKTGISSAFVNDFPALNGLDISALSVIMDSGGYIPMHTHRGATELIIMVEGQMTAGFLTHDASYVKTLKPGDLMVIPRGLMHFVANYGKDKVVAFAAFSSSNPGIHSFNDIFSNNLPSDILAQTTFLDVAQVKKLKDRFHGSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00398 210 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Cca11g00398 210 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Cca11g00398 210 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Cca11g00398 210 CDD cupin_OxOx 23 206 - -
Cca11g00398 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 10 206 - -
Cca11g00398 210 Pfam Cupin 63 200 IPR006045 -
Cca11g00398 210 Gene3D Jelly Rolls 21 210 IPR014710 -
Cca11g00398 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 206 - -
Cca11g00398 210 SMART Cupin_1_3 57 200 IPR006045 -
Cca11g00398 210 SUPERFAMILY RmlC-like cupins 27 207 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00398 Cca-Chr11 5410704 5411510 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00398 1 209 Miscellaneous Gene Families AT5G20630 43.662 2.98e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00398 - - gsj:114391045 281.952