Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00396 ATGATGAACATGTTTCACATTcttttcctcttcactcttctctcatccacttcctatgcttctGTCAACGATTTCTGCATAGCAGACCTAAAAGGTCCAAATAGCCCTTCAGGCTATCAGTGCAAGCCACCCAACACAGTGACAGTGGATGACTTTGTGTTCTCTGGCTTTGTAGCTGGAAACATCACAAACCCTTTCAATATTGCATTAACCCCAGCATTTGTGACCGAATTTCCAGGAGTAAATGGCCTTGGAATTTCTGCAGCACGGTTAGACATGGGCGTAGGAGGATCTGTTCCAATGCACTCGCATCCTGGTGCCACTGAACTACTCATAATGGCCAAGGGTAAAATCACTGCTGGTTTTATAACACCCTCTGGGCCATATGTGAAGAAACTGAAACCAGGAGATGTTATGGTTTTCCCACAAGGACTCATGCATTTTCAAGTGAATTCTGGTAAGGGAAAAGCCAGTGCTGTTTTGGCTTTTAGCAGCGAAAACCCTAGCGCGCAACTGCTTGATCTTCTCTTGTTTGGCAATAGTTTGCCTTCTGAGTTGGTTGCACAAACTACCTTACTTGATGTTGCGCAAGTGAAGAAGCTCAAGCCTCTTTTTGGTGGCAGAGGCTAG 630 0.4222 MMNMFHILFLFTLLSSTSYASVNDFCIADLKGPNSPSGYQCKPPNTVTVDDFVFSGFVAGNITNPFNIALTPAFVTEFPGVNGLGISAARLDMGVGGSVPMHSHPGATELLIMAKGKITAGFITPSGPYVKKLKPGDVMVFPQGLMHFQVNSGKGKASAVLAFSSENPSAQLLDLLLFGNSLPSELVAQTTLLDVAQVKKLKPLFGGRG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00396 209 SMART Cupin_1_3 54 199 IPR006045 -
Cca11g00396 209 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Cca11g00396 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 204 - -
Cca11g00396 209 Gene3D Jelly Rolls 19 208 IPR014710 -
Cca11g00396 209 SUPERFAMILY RmlC-like cupins 24 202 IPR011051 -
Cca11g00396 209 Pfam Cupin 58 198 IPR006045 -
Cca11g00396 209 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Cca11g00396 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Cca11g00396 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Cca11g00396 209 CDD cupin_OxOx 22 205 - -
Cca11g00396 209 PANTHER GERMIN-LIKE PROTEIN 7 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00396 Cca-Chr11 5391854 5392814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00396 1 207 Miscellaneous Gene Families AT5G20630 54.545 7.40e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00396 - - gmx:100813853 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00396 11 5391854 5392814 Cca11g00396 11 5391854 5392814 ECH