Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00388 ATGGCGTTTGGTTTCAGAGTGTTTTCCGCGTCACTTCTCGCAATCGCCTTTCTCCTCCTTTTCGAGGAGTGGGCCTCAACTCCCTCTTGCACCACTGCCAATCCCCTGCATCGCCACCCACACCAGCACACCAACAACCTCAACGTCATGATCGTCGCCGATCTTCTCCTCCCCGCTTCCGATTCCTCTCTCCTCAACCACCTCTTCCGTCACTACTACATGTCCAAATTCTTCCGGAAATCGTTCGAGACTCTGCGGCCCGATCTTCTTCTGGTGCTGGGCGACGTCTCCGCGCGGGGCTCCGGGCTCACCAGGCCCAAGTGGGTGTCCGTGCTGCGTCAGTTCTACCGCGTGTTGGGCCCCTTCGTTGGGCTTCCCTTCCACGCCGTTCTCGGCGACAGGGACGTCGGCGAGTGCCGCGACCTCGACGCCGAGAGAGTTTCTTGGCTTGCGAGCAAGTTGCCGGGGCTGGACTCCGCCGGCTGCGCCGCGTTTGAGATGGGCAACGTGAGTTTCGTGACGCTCAATGCTGTGGCCCTGCTTTGCGGGAATTGCGGGTTGCGTTTTGAGGTTGAGAGGGTGGTAGAGAGGGAGAGTGTGGAGCTTAGGGTGAATGGTTCCAATGAGTTTGGGTCGGGGCCTGTGGTTCTGCTGCACTTCCCTTTGGACCGAACCAGGAATGATGACTATGCTGATTTTCAGAGATCTTCCAAGTCTTTGACTCAAGGGTTAAATGTGCTGCCACAAAACAGGGAGGTTGATGGGGGTGGCCCGTATGATGTACTTCATACCCTGCCTCTGAATGCTTCTGAATACATTTTACAAGCTCTGAAGCCAAGTATAGTTGGAATTTACATTTTTTTTAAAATTCGATGTGGGACTAAATTTGCCACACCATATTCAACAGATAGAACTCGTGAGATTACTGTTCCAGCAATGTCATGGAATGCAAGAGATGACCCTGGATTTGTGATTGCCACTTTCCAAAAGGAAGGAAGAGCACCAAGGCAGAAAGGTGGACTAGTCCAGCCGTCTCAATTCTCCTCAGGTAATTCTGCTGGACAATCACTTCAAGGAATGCAAGCAATGGGCATGATGGGGTCACCAAATCTCAACTCACAACTTCGAGCCAATGGAGCCATGGCTTATGCGCAGCTACGTATGAGTCAGGGACAAATAAGGCAGCAGCTATCACAACAAAGTTCGCTTAACACTGCACAGGTTCAAGGTTTACCAAGGTCATCATCTCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCTCAGAATGGACAACCTGCGATGATTCATAACTCTTTAACGCAGCAGCAGTGGATTAAACAAATGCCAGCAATGTCTGGCCCTGGCTCACCATTGCGTCTTCAACAGCATCAGAGGCAGCAGCAGCTGGCTTCTTCTAATCAATTGCAACAAAATCCTATAACCCTGAACCAGCAGCAATTGTCCCAGCTGATGCAGCAACAGAAATCGATGGGACAGCCTCAGCTGcatcagcagcaacaacaacaacagcagcagactcagcagctgcaacaacaacaacttatgcaacagcagccacaacaacaaTCTCAGCTGCAAGCTTCTGTCCATCAACAGCAACAGCAGCAGTCTCCAAGGATGCCTGGACCTTCAGGCCAAAAGTCAGTTAGCCTAACAGGATCACAGCCAGATGCTACTGCATCTGGCGCAACTACACCAGGTGGCAGTTCTAGCCAAGGAACTGAAGCGACGAACCAAGTCCTTGGAAAGAGAAAGATACAAGACTTAGTTGCACAGGTGGATCCACAGGGTAGGTTGGATCCGGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGATTCTACAACTACACATGGTTGCATTTTGGCGAAACACAGAAAGTCGTCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACTATTCCAGGATATTCAAGTGAAGAGAAGAAGTATCAGAGCAAACCTCAATTAAATGAACTCCACAAAAGACGCCTAGATGTGATTCGCACACTGATGGAATCCTCGCCCTCTGAGTCTAGTATTAACAGTTCCAAAGAAATGAGTAGACAGGGCATTTCTAATCCTACTTCTGTGGGAGCCCACCACATAGTAAGACCCTTGAGTTCAGAGCAAATGGTTTCTCATTCATCTGGTTCTCAAATGCTACAGCAGATGACAAGGTTTAACTGCCTGTATGCTGGTCTGAAGAGATTGGTTGCTGAAACTGATTAG 2286 0.4755 MAFGFRVFSASLLAIAFLLLFEEWASTPSCTTANPLHRHPHQHTNNLNVMIVADLLLPASDSSLLNHLFRHYYMSKFFRKSFETLRPDLLLVLGDVSARGSGLTRPKWVSVLRQFYRVLGPFVGLPFHAVLGDRDVGECRDLDAERVSWLASKLPGLDSAGCAAFEMGNVSFVTLNAVALLCGNCGLRFEVERVVERESVELRVNGSNEFGSGPVVLLHFPLDRTRNDDYADFQRSSKSLTQGLNVLPQNREVDGGGPYDVLHTLPLNASEYILQALKPSIVGIYIFFKIRCGTKFATPYSTDRTREITVPAMSWNARDDPGFVIATFQKEGRAPRQKGGLVQPSQFSSGNSAGQSLQGMQAMGMMGSPNLNSQLRANGAMAYAQLRMSQGQIRQQLSQQSSLNTAQVQGLPRSSSLAFMNSQLSGLSQNGQPAMIHNSLTQQQWIKQMPAMSGPGSPLRLQQHQRQQQLASSNQLQQNPITLNQQQLSQLMQQQKSMGQPQLHQQQQQQQQQTQQLQQQQLMQQQPQQQSQLQASVHQQQQQQSPRMPGPSGQKSVSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGRLDPEVIDLLLELADDFIDSTTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKYQSKPQLNELHKRRLDVIRTLMESSPSESSINSSKEMSRQGISNPTSVGAHHIVRPLSSEQMVSHSSGSQMLQQMTRFNCLYAGLKRLVAETD 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00388 761 MobiDBLite consensus disorder prediction 692 716 - -
Cca11g00388 761 MobiDBLite consensus disorder prediction 458 474 - -
Cca11g00388 761 MobiDBLite consensus disorder prediction 450 474 - -
Cca11g00388 761 CDD TAF12 589 657 IPR003228 GO:0005669|GO:0006352
Cca11g00388 761 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 334 528 IPR037794 GO:0000124|GO:0005669|GO:0046695
Cca11g00388 761 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 511 745 IPR037794 GO:0000124|GO:0005669|GO:0046695
Cca11g00388 761 SUPERFAMILY Metallo-dependent phosphatases 49 230 IPR029052 -
Cca11g00388 761 SUPERFAMILY Histone-fold 587 658 IPR009072 GO:0046982
Cca11g00388 761 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 334 528 - -
Cca11g00388 761 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 511 745 - -
Cca11g00388 761 Gene3D Histone, subunit A 584 659 IPR009072 GO:0046982
Cca11g00388 761 MobiDBLite consensus disorder prediction 341 356 - -
Cca11g00388 761 MobiDBLite consensus disorder prediction 692 715 - -
Cca11g00388 761 MobiDBLite consensus disorder prediction 529 588 - -
Cca11g00388 761 MobiDBLite consensus disorder prediction 334 356 - -
Cca11g00388 761 Pfam Transcription initiation factor TFIID subunit A 590 657 IPR003228 GO:0005669|GO:0006352
Cca11g00388 761 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00388 Cca-Chr11 5187820 5206938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00388 K03126 - gmx:100783017 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00388 11 5187820 5206938 Cca11g00388 11 5187820 5206938 ECH