Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00387 ATGGGTTCTCGAGGAAGGCTGTTATTTGATCTCAATGAGCCACCTGCAGAGGATAATGATGATAGGGATAACGACAGGGAGGGTATTGTCTGTATCCAGCCCCAAAAGATGCTCCCATCAACCAATCCCCATGCGTCTGACTTATTTGCAACATCAACTGCTGCCCAAGGAATAATAAATAATCATGCTTTTTCACATGCGTCATCTGTCTCTGGATTTCAACCTTTTGTTCGGCCAAAATCCACTGGTGTCCCTGAATCGGATGCTGAATCAAAGAGAGCAGGAGATCAAGATGCAAAGGTTTCCTCTAAGTCAAGTAAAGATGAAGATGTTAAAGTTACAGATTCACGGATATTAAGTTTGACAAATCCTCAATCTATGGAGAGGGAAGAAGGGGAATGGTCTGATGAGGAGGGCTTTACAaatgctaatggaggtaataatgctaatgcaaatgGAGGCAATAATTTGGCACAGCGAAGTCAAGCATCATCAGAAGAGCCTGTAACATCTGGAATGGTGGATGGGGGTGTTGCAGTGGCTTCTGACAGTAAGTCTAGAAATATTAAGAGTTCTGATAGTATAAATGATGAAAAGAGTAGCCATGCTTCTATAGGTGTAGAATCAAATCCTAGTGAACAGAAAAGCAATAGTATTCCAAATTCAGATAGCAATGTAAAAAGTGAAGCTTCTATTGATGCACAGGAGGAACCCACTTTAATTCCCAAGCAAAAAGAAGTGAAAGGTATTGAAGCAAGTCATGCACTTAGGTGTGCAAATAATCCTGGGAAGAGGAAGATTGACCAACGTAAAGAGGAAATGTTGGGAAAGAAACGGAATAGACAGACCATGTTTCTTAACTTGGAAGATGTCAAGCAAGCTGGTCCTATTAAAACCTCAACCCCTAGAAGGCAGACTTTCTCATCACCCATCATAAGTCGTACCATAAAGGAAGTTCGCACTGTTCCTGCACAAGTTGAGCGTGTCGGAATATCCAAGGATCATAAGCTTACTGACACATCTTCTGGTGAAGGTGGCAACCATGCTGAAGCACATGAACCAAAATCTGATTGTAATGGTGATACTTCTGGACCACTTGTCAGAACTAGGAGGCTAAATAGTGAGACAGAACCTTCTACAGAGTCTAATTTGCCACCTATTCCAAGACAGGGTTCTTGGAAACAACTGACAGATTCAAGGCAGCAGAAGAATGCACTCCATTCTAATAGGAAGTTGGGACAGAGTGGTCAAAGCTCCAGTGATATCAAATTAGGAAACAAGAAACATCTTTCTATCAAGAAGCAGACTCCTATCAGCAGCCAGTCCCAGGACACATCTGTTGAACGCCTTATACGGGAGGTGACCAGTGAAAAGTTTTGGCACCACCCAGAGGAGACCGAGCTACAGTGTGTTCCTGGACGGTTTGAATCAGTGGAAGAGTATGTTAGAGTATTTGAGCCTTTGCTTTTTGAGGAATGTCGGGCTCAACTTTACAGTACCTGGGAAGAATCAACAGAAACAGTGTCAAGGGATACACATATTATGGTGCGAGTGAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGATGTGAAAGTCCTTCCGGTACACGAGTTCAAATGGTCATTTAAGGAGGGTGATGTTGCAATCCTTTCATCCCCTAGGCCTGGATCAGTCAGATCCAAGCAGAACAGTTCATCTTTAGCTCAGGATGATGGGGAATCAGAAATCACTGGACGTGTGGTTGGTACTGTTAGGCGTCACATACCCATTGATACTCGAGATCCTCCTGGTGCAATTCTACATTACTATGTTGGAGACTCTTATGATCCTAGCAGGGTTGATGATGATCATATCATAAGGAAACTACAAAGTGGAAGCATCTGGTATCTCACAGTGCTTGGTTCTCTTGCTACCACACAGAGGGAGTATGTCGCCCTTCATGCATTTCGTCGCTTAAATTTGCAGATGCAAACTGCAATCCTTCAGCCTAGTCCCGAACACTTCCCTAAATATGAGCAACATACCCCAACGATGCCTGAATGCTTCACACAGAACTTTGTTGAGTATTTGCGTAGGACCTTCAATGAACCCCAGTTGGCTGCAATCCAATGGGCAGCAATGCATACAGCTGCTGGTACAAGTAGTGGGACAACAAAGAGGCAAGAACCCTGGCCATTTACCCTTGTTCAAGGACCCCCAGGAACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCACCTTGTTCAGTATCAGCACTACTACACCTCTTTACTTAAGCATGTAGCACCTGAGAGCTACAAGCTCAATGATATCAGTTCAGAGCATGCCCCCACTGGTTCTATTGATGAAGTTCTTCAAAACATGGACCAGAATCTCTTACGAACTTTACCTAAACTGGTCCCAAAACCTAGAATGTTAGTTTGTGCTCCGTCTAATGCTGCCACTGATGAGCTTCTTGCTCGTGTTCTTGATCGTGGGTTTATTGATGGGGAGATGAAAGTATATCGACCTGATGTAGCTAGAGTTGGGGTCGATTCTCAGACACGTGCTGCCCAAGCAGTTTCTGTAGAGCGTAGAACTGAACAGCTTCTTGTCAAGACTAGGGAAGAAGTTATGGGATGGATGCACCAGTTAAAGAATCGTGAAGCACAGTTGACTCAGCAGTTACATTGTCTTCACAGAGAACTAAAtgctgctgctgctgctgTTCGTTCTCAAGGATCTGTTGGTGTTGATCCTGACCTTCTTATAGCCCGAGATCAGAATCGAGATACTTTGCTACAGAACCTTGCTGCTGCTGTTGAAAACAGGGACAAGATTCTGGTTGAGATGTCTCGCCTTGCCCTTCTGGAAAGTAGGTTCCGTCCTGGTAGTGGTTTTAATTTGGAAGAGGCTCGGGCTAGTTTGGAGGCCAGTTTTGCAAATGAAGCCGAGATAGTTTTCACAACAGTTTCTAGCAGTGGCCGCAAGTTGTTTTCTCGTCTTTCCCATGGTTTTGATATGGTGGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTTGCAGTTCTGCCTCCCCTCTCTCTTGGTGCCGCACGATGTGTTCTTGTTGGAGATCCTCAGCAGCTTCCTGCCACCGTTATAAGCAAGGCGGCTGGAACATTGATGTATAGTAGGAGTCTTTTTGAAAGGTTCCAACAAGCAGGATGCCCGACAATGTTGTTGTCTGTGCAATATAGAATGCATCCCCAAATTCGGGATTTCCCTTCTAGGTACTTCTATCAGGGGCGTCTTACTGATAGTGAAAGTGTGGCTAAATTGCCTGATGAGCCATACTACAAAGACCCTTTACTAAGACCTTATTTATTCTATGATATCAGACATGGGCGTGAGTCTCACAGAGGTGGATCAGTATCTTACCAAAACATACATGAAGCACAATTTTGTCTCCGACTGTATGAGCATGTTCAGAAAGCAGTGAAGTCTTTGGGCGTAGGAAAGATTACTGTTGGCATAATAACTCCTTATAAGCTGCAGTTGAAATGCCTCCAGCGCGAGTTTGAGGAAGTCTTAAATTCAGAAGAAGGGAAGGATATATATATCAACACAGTAGATGCCTTCCAAGGTCAAGAACGGGATGTCATTATAATGTCTTGTGTGCGTGCATCCAGTCATGGGGTTGGCTTTGTTGCAGATATACGACGAATGAATGTTGCCCTTACGCGTGCACGAAGGGCCCTTTGGGTATGGATATCTTTCTAA 3750 0.4355 MGSRGRLLFDLNEPPAEDNDDRDNDREGIVCIQPQKMLPSTNPHASDLFATSTAAQGIINNHAFSHASSVSGFQPFVRPKSTGVPESDAESKRAGDQDAKVSSKSSKDEDVKVTDSRILSLTNPQSMEREEGEWSDEEGFTNANGGNNANANGGNNLAQRSQASSEEPVTSGMVDGGVAVASDSKSRNIKSSDSINDEKSSHASIGVESNPSEQKSNSIPNSDSNVKSEASIDAQEEPTLIPKQKEVKGIEASHALRCANNPGKRKIDQRKEEMLGKKRNRQTMFLNLEDVKQAGPIKTSTPRRQTFSSPIISRTIKEVRTVPAQVERVGISKDHKLTDTSSGEGGNHAEAHEPKSDCNGDTSGPLVRTRRLNSETEPSTESNLPPIPRQGSWKQLTDSRQQKNALHSNRKLGQSGQSSSDIKLGNKKHLSIKKQTPISSQSQDTSVERLIREVTSEKFWHHPEETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPVHEFKWSFKEGDVAILSSPRPGSVRSKQNSSSLAQDDGESEITGRVVGTVRRHIPIDTRDPPGAILHYYVGDSYDPSRVDDDHIIRKLQSGSIWYLTVLGSLATTQREYVALHAFRRLNLQMQTAILQPSPEHFPKYEQHTPTMPECFTQNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSGTTKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKLNDISSEHAPTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKTREEVMGWMHQLKNREAQLTQQLHCLHRELNAAAAAVRSQGSVGVDPDLLIARDQNRDTLLQNLAAAVENRDKILVEMSRLALLESRFRPGSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVAKLPDEPYYKDPLLRPYLFYDIRHGRESHRGGSVSYQNIHEAQFCLRLYEHVQKAVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGKDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVWISF 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00387 1249 MobiDBLite consensus disorder prediction 554 577 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 298 312 - -
Cca11g00387 1249 Gene3D - 627 1074 IPR027417 -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 329 357 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 198 232 - -
Cca11g00387 1249 Gene3D - 1075 1249 IPR027417 -
Cca11g00387 1249 Pfam AAA domain 1053 1245 IPR041679 -
Cca11g00387 1249 Coils Coil 879 899 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 140 169 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 362 425 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 327 425 - -
Cca11g00387 1249 CDD DEXXQc_SETX 695 1076 - -
Cca11g00387 1249 Pfam AAA domain 701 1046 IPR041677 GO:0004386
Cca11g00387 1249 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1245 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 76 312 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 85 115 - -
Cca11g00387 1249 CDD SF1_C_Upf1 1077 1245 IPR041679 -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 261 285 - -
Cca11g00387 1249 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1245 IPR045055 -
Cca11g00387 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 1245 IPR027417 -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 556 573 - -
Cca11g00387 1249 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00387 Cca-Chr11 5142366 5150895 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00387 - K10706 gmx:100794516 2257.26