Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00383 ATGAGTTTTCTGTTCGGCGGTAGAAAGACTCCAGCTGAGCTTTTGAGGGAGAACAAAAGGATGCTGGACAAGTCCATTAGAGATTTAGAAAGGGAAAGACAAGGCTTGCAGAATCAAGAAAAGAAGTTGATTGTCGAGATTAAGAAGAACGCCAAACAAGGACAGATGGGGGCAGTGAGAGTGATGGCCAAGGATCTCATCAGAACTCGCCATCAGATTGAAAAGTTTTACAAGCTCAAATCCCAACTTCAGGGTGTTGCGTTGAGAATTCAGACACTAAAATCCACTCAAGCAATGGGGGAGGCTATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAAGTTGCCTTCCTTGCAGAGAATAATGCAAGAGTTTGAAAGGCAGAATGAGAAAATGGAACTGGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCTTTGGAAGGTGATGAAGAAGAGGAAGAGACTGACGAGCTTGTGAATCAGGTTCTTGATGAGATCGGAATCGATATCAACTCTGAGCTTTTGAATACACCTGCATCAACCTCTGTCAGTGCACCAGCGGCAAAGAACAGGGTTGCTCAAGCTGAATCAACTGGCAACGAAGACAGTGGAATAGATGACGATCTACAGGCTAGGTTAGATAACCTGAGAAAAATGTGA 675 0.4356 MSFLFGGRKTPAELLRENKRMLDKSIRDLERERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGEAMKGVTKAMGQMNRQMKLPSLQRIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETDELVNQVLDEIGIDINSELLNTPASTSVSAPAAKNRVAQAESTGNEDSGIDDDLQARLDNLRKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00383 224 MobiDBLite consensus disorder prediction 184 213 - -
Cca11g00383 224 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 224 - -
Cca11g00383 224 Gene3D - 7 180 - -
Cca11g00383 224 MobiDBLite consensus disorder prediction 184 205 - -
Cca11g00383 224 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 224 IPR005024 GO:0007034
Cca11g00383 224 Coils Coil 12 46 - -
Cca11g00383 224 Pfam Snf7 17 185 IPR005024 GO:0007034
Cca11g00383 224 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00383 Cca-Chr11 5080564 5083012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00383 K12191 - nnu:104609351 357.451