Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00379 ATGTCTTTGATTCGACGGAGAAAAGGGTCGGAAGCGGAAAAGGATCCAAGTCCGAGTTCGGAGCCGAAGATTCTAAGCgaagaggataaggaagatgataatgataagaacaagactaagaagaagaaagatgcgaaggtgaagaggaacaaATGGTCGTGCATCGACACGTGTTGTTGGTTCGTAGGTTGCATTTGCACGGTATGGTGGTTTCTTCTGTTTATGTATCAGATGATGCCTTCTTCGCTTCCTCAGTATGTGACTGAGGCCTTCACTGGGCCCATGCCTGACCCACCGGGCCTCAAGCTCAAGAAGGAGGGGCTCAAGGCCAAGCACCCTGTGGTTTTTGTGCCCGGGATTGTCACCGGAGGCCTTGAACTATGGGAGGGTCATCAGTGCTCTGAGGGCTTGTTCAGGAAACGCTTGTGGGGTGGCACTTTCGGAGAAGTCTATAAAAGACCTTCATGCTGGGTGGAGCACATGTCACTGGACAATGAAACGGGATTGGATCCACCTGGCATAAGAGTTAGGCCTGTCTCTGGACTTGTAGCTGCTGATTACTTTGCTGCAGGATACTTTGTATGGGCAGTCCTAATTGCTAACTTGGCACGCATTGGTTATGAAGAAAAAACTATGCACATGGCTGCATATGATTGGAGAATATCATTTCAAAACACTGAGGTTAGGGATCAAACACTCAGTCGGATAAAAAGCAACATAGAACTTATGGTTGCTACTAATGGTGGGAATAAGGCAGTTATTATTCCACACTCAATGGGTGTGTTGTACTTTCTTCATTTTATGAAGTGGGTTGAAGCACCAGCTCCAATGGGTGGTGGGGGAGGACCAGATTGGTGTTCCAAATATATAAAGGCAGTTGTAAACATTGGTGGACCATTTTTAGGTGTTCCCAAGGCTATAGCTGGCCTTTTTTCAGCTGAGGCCAGGGATATTGCTGTTGCCAGGACAATAGCACCAGGATTTTTAGATAACGATTTGTTTCGCCTTCAAACCTTGCAACATGTAATGAAGATGACCCGTACTTGGGACTCAACAATGTCAATGATACCAAGAGGAGGAAATACTATATGGGGTGATCTTGATTGGTCACCAGAGGAAGGCTATCTCCCTAGAAAGAGAAAGCAAAACAATAACTATACTCAGTTGGCAAGCCAAGAGACAAATCAAACAAATGTCAACTATGGAAGAATTATATCATTCGGAAGAGACGTGGCGGAGGCACATTTCTCTAAGATTGAGATGGTTGACTTCCGGGGTGCCATCAAGGGTCGGAGTGTTGCAAATACCACTTGTCGTGATGTGTGGACTGAATACCATGAAATGGGATTGGAGGGAGTAAGAGCAGTTGCTGAGCATAAAATTTACACAGCTGACTCAATCGTAGACCTGCTTCAGTTTGTTGCTCCAAAGATGATGGCTCGTGGTAGTGCTCATTTCTCTTATGGAATTGCTGACAATTTGGATGATCCTAAATACAATCACTACAAATATTGGTCAAACCCCTTGGAAACAAAATTACCAAATGCTCCTGATATGGAAATCTTCTCTATGTATGGAGTTGGCTTACCAACTGAAAGAGCTTATATTTACAAGTTAACTCCCTTTGCCGAGTGTTACATTCCTTTTGAAATTGACCCTCACGCAGATGGTGGTAGTGACGAAGACAGTTGTCTAAAAGGTGGTGTCTACACTGTTGATGGCGATGAGACTGTGCCAGTTCTAAGTTCAGGCTTCATGTGTGCCAAAGGTTGGCGCGGAAAAACAAGATTTAACCCTTCCGGTATTCGCACCTACGTTAGAGAATATGATCATTCTCCTCCGGCCAACCTTCTAGAGGGCAGGGGAACACAAAGTGGTGCTCATGTTGACATCATGGGAAACTTTGCATTGATTGAGGATGTTATAAGAGTGGCTGCTGGGGCCTCAGGAGAAGAACTAGGAGGTGATAAGGTGTATTCTGATATCTTTAAATGTGCTTGGTGGCTCCTTTTTTTAATTGATTTTTGTCTCGGCATTGAAAACTGTGATTCTGATTCTCTCTCCGACGCTGCAATCCGTGTCTCCTTCACCGCAATTCCTATTCTGATCGCACTCCCAGATTTTAGTGGGGCAAGGGCTAAAGAAGGGGCAACTAAGTCTGATAATAAGATCCCCTCTGGAAAATCAAATGCCAGCAGCAGATTACCAAGTACAGGTTTTGTGACTGACAACAAAGTTGGTAGTTATGGGACTCCTTCACATGATCGACTAGTATATTTAACAACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGAttttgGAATCATTTTGAAAATGGCTCGCTTGACAAAGGAGGGCACTTTGCAAGGACAGAGATCTGGTGTAGAATTTGTCAGCAAAGCACCTTCTAAGACATTAATTATACCTGCCAATGACCTTGTACAAGTTATTGTGAAGGATTTGGCTGTTTCCAGAGATGGTCTACCTAGTGAATCTCACTATGATATGCAGCACGAGATCATGGTTGATTCAGTAATATCTCAATCTCGTCATGTTGAGATAGGTAGAGAGTTACAGCGATGGGTGCCCGATGAAGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGATGGCCCTTGGAATAGGTGGGGATGGGATCAGTTTGAAACAAATGAGACATTGTTTGGTGTAAAAAGCACATTCAATGAGGAAATCTATACAACAAAGCTTGAAAAAGGGCCTAAGACAAGAGAGCTGGAAAAGCAAGCTTTAAAAATAGCTAGAGAAATTGAGGGTGAAGAAACCGAAGATCTACATCTGGCTGAGGAAAGAGGCCTTTATCATAACTTTGATATTGATGAAGAAACCAGATTTTCTTCAGTCTATAGGGGTAAAGGTGTTGATGATATTGGTTATGATGAAAATGAGGACAAGCTGTTGGATTCGCACAATTCTGAAACATTTGGTAGTATTTATGATTTAGCCATTACGAGACCAGGTGAAGCAATTGGTCAAAAAGGCAATAACGGAACACAAACATGGTCAAATTTATCTTCTGCGGtgatggaggaggcccatgggccaaaggcccaactactagggctatggccaagaggattcatgaagaatgggcccatgctcaagagaagcccatag 3216 0.4098 MSLIRRRKGSEAEKDPSPSSEPKILSEEDKEDDNDKNKTKKKKDAKVKRNKWSCIDTCCWFVGCICTVWWFLLFMYQMMPSSLPQYVTEAFTGPMPDPPGLKLKKEGLKAKHPVVFVPGIVTGGLELWEGHQCSEGLFRKRLWGGTFGEVYKRPSCWVEHMSLDNETGLDPPGIRVRPVSGLVAADYFAAGYFVWAVLIANLARIGYEEKTMHMAAYDWRISFQNTEVRDQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGPDWCSKYIKAVVNIGGPFLGVPKAIAGLFSAEARDIAVARTIAPGFLDNDLFRLQTLQHVMKMTRTWDSTMSMIPRGGNTIWGDLDWSPEEGYLPRKRKQNNNYTQLASQETNQTNVNYGRIISFGRDVAEAHFSKIEMVDFRGAIKGRSVANTTCRDVWTEYHEMGLEGVRAVAEHKIYTADSIVDLLQFVAPKMMARGSAHFSYGIADNLDDPKYNHYKYWSNPLETKLPNAPDMEIFSMYGVGLPTERAYIYKLTPFAECYIPFEIDPHADGGSDEDSCLKGGVYTVDGDETVPVLSSGFMCAKGWRGKTRFNPSGIRTYVREYDHSPPANLLEGRGTQSGAHVDIMGNFALIEDVIRVAAGASGEELGGDKVYSDIFKCAWWLLFLIDFCLGIENCDSDSLSDAAIRVSFTAIPILIALPDFSGARAKEGATKSDNKIPSGKSNASSRLPSTGFVTDNKVGSYGTPSHDRLVYLTTCLIGQHVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKEGTLQGQRSGVEFVSKAPSKTLIIPANDLVQVIVKDLAVSRDGLPSESHYDMQHEIMVDSVISQSRHVEIGRELQRWVPDEDDPQCPELENIFDGPWNRWGWDQFETNETLFGVKSTFNEEIYTTKLEKGPKTRELEKQALKIAREIEGEETEDLHLAEERGLYHNFDIDEETRFSSVYRGKGVDDIGYDENEDKLLDSHNSETFGSIYDLAITRPGEAIGQKGNNGTQTWSNLSSAVMEEAHGPKAQLLGLWPRGFMKNGPMLKRSP 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00379 1071 MobiDBLite consensus disorder prediction 1 40 - -
Cca11g00379 1071 Pfam Lecithin:cholesterol acyltransferase 138 429 IPR003386 GO:0006629|GO:0008374
Cca11g00379 1071 Pfam Lecithin:cholesterol acyltransferase 466 633 IPR003386 GO:0006629|GO:0008374
Cca11g00379 1071 MobiDBLite consensus disorder prediction 1 43 - -
Cca11g00379 1071 Gene3D - 761 820 - -
Cca11g00379 1071 SMART LsmAD_2 915 984 IPR009604 -
Cca11g00379 1071 PANTHER PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1 25 665 - -
Cca11g00379 1071 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 25 665 - -
Cca11g00379 1071 MobiDBLite consensus disorder prediction 716 736 - -
Cca11g00379 1071 Pfam LsmAD domain 915 983 IPR009604 -
Cca11g00379 1071 Coils Coil 936 956 - -
Cca11g00379 1071 MobiDBLite consensus disorder prediction 722 736 - -
Cca11g00379 1071 Gene3D alpha/beta hydrolase 156 332 IPR029058 -
Cca11g00379 1071 SUPERFAMILY alpha/beta-Hydrolases 102 501 IPR029058 -
Cca11g00379 1071 Pfam Ataxin 2 SM domain 754 838 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00379 Cca-Chr11 4969706 4986405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00379 154 664 Acyl Lipid Metabolism Gene Families AT5G13640 76.265 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00379 K00679 - gmx:100812643 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00379 11 4969706 4986405 Cca11g00379 11 4969706 4986405 ECH