LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00362	ATGCCCTACGCATCTCATTTGCTCCATCACTCTGCAAAGATGAGGAATGCTTCCAAGTTGCTGCACCATGACCGTGCTCTTCTCGTTCGTTGGTTTTCCGCCGATGCTCAATCCTCCCTCGCCCGGAATCGCGATGTGTGGCAATCTCGATTCCATGAGTCTTCAACAAGAACTGTCTCTGAACCGGCCGCCTCCGGCTTTACTAAGCTCTCATTTGGTGGACAGAAGAGAAGCATCTCCATGGCTACCAGTAAAAGGGGTTCCATTATTGGGTCTCGGTTCAATGGACAGATTTCACAAAGTTCACAGGTGCTGTCAAGGAGGTGCTATGCCTCAGCCTCAGATCTCCCCCCACACCAAGAAATTGGAATGCCTTCTCTTTCACCTACAATGACCGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAAATGGAATGCATGGAGGAAGGTTATCTGGCCAAGATAGTCCGTGGGGATGGGCAAAAGGAAATTAAAGTTGGCGAGGTAATCGCCATAACTGTTGAAGATGAGGAGGATATTGCAAAGTTTAAAGATTACCAACCTTCAGCATCTGAACCAAGTGAGCCACCTGCCAAAGAAACATCTGCCCCACCTCCACCAAAGAAAGAGGTGGTAGCAGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCCAGTGCACCATCTTCATCTGGAGATCGCATATTTGCCAGTCCTTTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTCTCTCCAGCATTAAAGGAACAGGACCTGAAGGGCTCATTGTCAAGGCTGACATTGATGATTTCTTGGCTTCTGGTGCTAAAGAAGTTTCAGCATCCTCAAAGGCCAAGGTTGCAACGGATGCAGCATTGGATTATACTGACATTCCTGTCTCTCAGATACGGAAGATCACAGCTTCACGGCTATTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACGTGTGTTGACAAACTCATGAGTTTGCGGACCCACCTCAATTCATTGCAAGAAGCCTCTGGTGGGGCCCGCATATCAGTCAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGCAAAGTTCCTCAATGCAACAGTTCATGGACAAATGATTATATTCGCCAGTATCATAATGTGAACATTAATGTTGCTGTGCAGACTGATCAGGGGCTCTTTGTTCCAGTAGTCAGGGATGCGGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTACGAGGGAGGTACATTTACAGTTTCTAACCTGGGAGGGCCATATGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGTCAGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCGTTCCGGGTTCGGGGGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCCGTGACCCTAAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA	1647	0.4621	MPYASHLLHHSAKMRNASKLLHHDRALLVRWFSADAQSSLARNRDVWQSRFHESSTRTVSEPAASGFTKLSFGGQKRSISMATSKRGSIIGSRFNGQISQSSQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVRGDGQKEIKVGEVIAITVEDEEDIAKFKDYQPSASEPSEPPAKETSAPPPPKKEVVAEPAREPEPKVSKPSAPSSSGDRIFASPFARKLAEEKNVPLSSIKGTGPEGLIVKADIDDFLASGAKEVSASSKAKVATDAALDYTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTHLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTDQGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPYGVKQFCAIINPPQSGILAVGSAERRVVPGSGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00362	548	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL	53	548	-	-
	Cca11g00362	548	PANTHER	DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX	53	548	-	-
	Cca11g00362	548	Pfam	e3 binding domain	257	291	IPR004167	GO:0016746
	Cca11g00362	548	Gene3D	-	114	219	-	-
	Cca11g00362	548	TIGRFAM	PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	121	548	IPR006257	GO:0004742\|GO:0006090\|GO:0045254
	Cca11g00362	548	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	144	173	IPR003016	-
	Cca11g00362	548	CDD	lipoyl_domain	120	193	-	-
	Cca11g00362	548	Pfam	Biotin-requiring enzyme	121	193	IPR000089	-
	Cca11g00362	548	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	317	548	IPR001078	GO:0016746
	Cca11g00362	548	ProSiteProfiles	Biotinyl/lipoyl domain profile.	119	195	IPR000089	-
	Cca11g00362	548	SUPERFAMILY	CoA-dependent acyltransferases	317	548	-	-
	Cca11g00362	548	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	251	296	IPR036625	GO:0016746
	Cca11g00362	548	Gene3D	-	302	546	IPR023213	-
	Cca11g00362	548	SUPERFAMILY	Single hybrid motif	118	213	IPR011053	-
	Cca11g00362	548	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	258	295	IPR004167	GO:0016746
	Cca11g00362	548	MobiDBLite	consensus disorder prediction	208	256	-	-
	Cca11g00362	548	Gene3D	-	246	299	IPR036625	GO:0016746

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00362	Cca-Chr11	4748599	4754437	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g00362	1	548	Acyl Lipid Metabolism Gene Families	AT1G54220	67.210	0.0	748

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00362	K00627		-	gmx:100778218	927.161