Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00361 ATGTTTGGGATCTTCAACAGGGGTCATAAGATAAAGGGAACTGTGGTGTTGATGAGCAAGAATGTGTTGGACTACAATGAAATAGCCTCCACCACTAGAGGCGGTCTCATGGGCGTCGCCGGAGGAGTCTTTGGCCTGGCCACCGACATAGCCGGTGGAATAGTTGATGCTTCCACTGCCATCTTCAGCCGTAACATTTCCCTACAGCTCATCAGTGCTACCAAAGCTGATGAGCTTGGAAATGGGAAACTTGGAAAGCAAACTTTTCTGGAGAAACATCTTCCTACGTTACCAACTTTGGGAGATAGGCAAGATGCATTCAATATTTATTTTGAATGGGATGAGAGTTTTGGAATTCCAGGAGCTTTTTACATTAAGAACTTCACGCAATCTGAGTTTTTCCTTGTGAGTGTCAAGCTTGAAGACATTCCAAACCATGGAACCATTGACTTTGTTTGCAACTCATGGATTTACAACGCCAAAAAATGTTACAAAAGTGATCGCATTTTCTTTGCTAACAAGACATATCTTCCAGATGAAACCCCAGCTCCACTAGTCAAGTACAGAAATGAAGAATTGGGAAATCTAAGAGGAGATGGAAAAGGGAAGCGCAAGGAATATGACAGGATCTATGATTACGAAGTTTATAACGATTTGGGCAACCCAGACGAGAATGGTGATCTAGTTCGTCCTATTCTTGGAGGATCTAGTGAGCATCCATACCCTCGTAGAGTAAGAACCGGTAGAAAAGCAACAACGAAAGATCCTAATAGTGAGAAACCATCCAGCAAAACTTATTACATACCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGACTTCCTTACATATGGGATCAAAGCCATTACTCAAAACGTTTTGCCTCGGTTTCAATCTGCATTTGGTTCAAATGCTGAATTTGAGTCATTTGAAGACGTGCGTGGACTCTATGAAGGTGGACTTTGTCTCCCTACAGACATAATCAGCAACATTAGCTCCATACCAGCGGTCAAGGAAATTTTTCGCACGGATGGCGAGCAATTCCTCAAGTTTCCACCGCCTCAAGTTATCAGAGTTAGTAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTAAATCCTGGCATGATTCAATGCCTTCAAGAGTTTCCACCTAAGAGCAAACTAGATGCCACACAATTTGGTGATCAAACCAGTACAATAACCAAAGAGCAATTGGAGATCAACCTTGGTGGACTCACCGTGGAACAGGCACTGAATGATAAGAGATTGTTTATATTAGATCACCATGATGCATTCATGCTGTATATGCGTCAGATAAATGGCCTCCCCACGGCAAAGTCTTATGCCACGAGGACAATCCTTTTCTTGAAAGATGATGGGACACTAAAGCCATTGACCATTGAACTAAGTTTGCCACATCCTAGAGGAAACGAGTTTGGTGCCCTTAGTAGAGTCGTCTTGCCCGCAAATGAAGGTGCTGAAAGCACAATTTGGCTACTGGCCAAGGCTTATGTTGTTGTAAATGACTCGGGCTATCATCAACTCATAAGCCACTGGTTAAATACTCATGCCACAATTGAGCCATTTGTCATAGCAACAAACAGGAATCTCAGTGTGCTCCACCCTATTTATAAACTTCTATTGCCTCACTATCGTGACACAATGAATATCAATGCACTTGCACGACAAAAGCTCATCAATGCAGGTGGCACTATTGAGCAATCATTTTTGCCTGGGAAATTCTCAATGGAGATGTCTTCAGCAGTTTACAAGAGCTGGGTTTTCACTGATCAAGCCCTTCCTGCGGATCTTATCAAGAGAGGAATGGCAGTTGTGGATCCATCCTCTCCCAATGGCCTTCGGCTTGTGATAGAGGACTACCCTTATGCAGTTGATGGACTAGAGATATGGAGTGCTATCAAAACATGGGTTCAAGACTATGTTTCAGTGTACTATGTCACAGATGATGCAGTTAAGAAAGACTCTGAACTCCAAGCTTGGTGGAAGGAAGCTGTTGAGAAGGGTCACGGTGACTTAAAAGATAAACCGTGGTGGCCTAAGTTGCAAACTCTTCAAGAGCTGATTCACACTTGCTCCATCATTATATGGATTGCTTCAGCTCTCCATGCAGCTGTGAATTTCGGACAGTACCCTTATGGAGGTTACATCCTAAACCGTCCAACACTAACCAGAAGGTTGCTCCCAGAAGTAGGAAGCGAAGAGTATGAAGAGTGTGGTAAGCATCCACAAAAGGCTTATTTGAGAACAATCACGGCAAAGTATCAGGCCCTTGTGGACCTTTCAGTGATAGAGATATTGTCGAGGCATGCTTCTGATGAGGTTTACCTTGGACAGAGGGACAATAATTGGACCTCTGATCCAAGGGCAATAGAGGCCTTTAAAAAGTTTGGAAAAGTGCTGAAGGAGATTGAGGCAAAAATCTCTGAGAGGAACAAGAATCCAAGGCTCAGAAACCGTAATGGGCCGGTTCAGATGCCCTACACTCTGCTTCATCCTACCAGTAAGGAAGGTTTGACCTGCAGTGGAATTCCCAACAGCATCTCTATCTAA 2595 0.4343 MFGIFNRGHKIKGTVVLMSKNVLDYNEIASTTRGGLMGVAGGVFGLATDIAGGIVDASTAIFSRNISLQLISATKADELGNGKLGKQTFLEKHLPTLPTLGDRQDAFNIYFEWDESFGIPGAFYIKNFTQSEFFLVSVKLEDIPNHGTIDFVCNSWIYNAKKCYKSDRIFFANKTYLPDETPAPLVKYRNEELGNLRGDGKGKRKEYDRIYDYEVYNDLGNPDENGDLVRPILGGSSEHPYPRRVRTGRKATTKDPNSEKPSSKTYYIPRDENFGHLKSSDFLTYGIKAITQNVLPRFQSAFGSNAEFESFEDVRGLYEGGLCLPTDIISNISSIPAVKEIFRTDGEQFLKFPPPQVIRVSKSAWMTDEEFGREMLAGVNPGMIQCLQEFPPKSKLDATQFGDQTSTITKEQLEINLGGLTVEQALNDKRLFILDHHDAFMLYMRQINGLPTAKSYATRTILFLKDDGTLKPLTIELSLPHPRGNEFGALSRVVLPANEGAESTIWLLAKAYVVVNDSGYHQLISHWLNTHATIEPFVIATNRNLSVLHPIYKLLLPHYRDTMNINALARQKLINAGGTIEQSFLPGKFSMEMSSAVYKSWVFTDQALPADLIKRGMAVVDPSSPNGLRLVIEDYPYAVDGLEIWSAIKTWVQDYVSVYYVTDDAVKKDSELQAWWKEAVEKGHGDLKDKPWWPKLQTLQELIHTCSIIIWIASALHAAVNFGQYPYGGYILNRPTLTRRLLPEVGSEEYEECGKHPQKAYLRTITAKYQALVDLSVIEILSRHASDEVYLGQRDNNWTSDPRAIEAFKKFGKVLKEIEAKISERNKNPRLRNRNGPVQMPYTLLHPTSKEGLTCSGIPNSISI 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00361 864 Gene3D - 278 363 IPR027433 -
Cca11g00361 864 PANTHER LIPOXYGENASE 3 864 IPR000907 GO:0016702|GO:0046872
Cca11g00361 864 Pfam Lipoxygenase 185 847 IPR013819 GO:0016702|GO:0046872
Cca11g00361 864 MobiDBLite consensus disorder prediction 232 267 - -
Cca11g00361 864 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
Cca11g00361 864 SMART LH2_4 9 173 IPR001024 GO:0005515
Cca11g00361 864 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 176 IPR036392 GO:0005515
Cca11g00361 864 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Cca11g00361 864 Gene3D - 177 277 - -
Cca11g00361 864 Gene3D PLAT/LH2 domain 1 176 - -
Cca11g00361 864 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Cca11g00361 864 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Cca11g00361 864 Pfam PLAT/LH2 domain 81 171 IPR001024 GO:0005515
Cca11g00361 864 PANTHER LIPOXYGENASE 3 864 - -
Cca11g00361 864 SUPERFAMILY Lipoxigenase 177 864 IPR036226 -
Cca11g00361 864 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 864 IPR013819 GO:0016702|GO:0046872
Cca11g00361 864 MobiDBLite consensus disorder prediction 242 257 - -
Cca11g00361 864 Gene3D - 364 498 - -
Cca11g00361 864 CDD PLAT_LH2 9 173 IPR042057 -
Cca11g00361 864 Gene3D - 499 863 - -
Cca11g00361 864 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Cca11g00361 864 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Cca11g00361 864 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Cca11g00361 864 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00361 Cca-Chr11 4714082 4721238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00361 10 864 Acyl Lipid Metabolism Gene Families AT1G55020 57.373 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00361 K15718 - gmx:100127399 1433.31