Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00349 ATGGCATCTCAAGGTTTGTGTCCTTCAATAAAAAATATTCTTCTTTTGGACTCTGAGGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTGTTTAGTAAGACTGTTAAGTCAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATCATCTACAAATTTGTACAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAGCTCATTTTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACACTTCTGTTAAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTATGTCTTGACGAGATTGTTGACGGAGGAATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTTACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACGCTTACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA 543 0.3996 MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFSKTVKSNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00349 180 SUPERFAMILY SNARE-like 10 151 IPR011012 -
Cca11g00349 180 PANTHER ZETA-COAT PROTEIN 5 180 IPR039652 GO:0006890|GO:0030126
Cca11g00349 180 PANTHER CLATHRIN ADAPTOR COMPLEX SMALL CHAIN 5 180 - -
Cca11g00349 180 Pfam Clathrin adaptor complex small chain 10 149 IPR022775 -
Cca11g00349 180 CDD Zeta-COP 11 146 - -
Cca11g00349 180 Gene3D - 4 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00349 Cca-Chr11 4510800 4514196 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00349 K20472 - gmx:547466 337.035