Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00342 ATGACGACGTCGTCCGGTTCCGTGAAGAACGCGATGCCCCCAAACCTCGAAAAAGTGCTTCTCAACAGAAAGCACCCCgaagaagaagaagaagaagaagaagaagaagaagaagaagaagGTGAAGAATCCAAGTCCAAAGCTGAACCCTCACAATCCTCTCCATCCACCGAAGACGCCGTCGCCGATGACAGCTCGAAGCCCATCGTGTTGATCACCAACAGTGACGGCATTGAGTCCCCGGGCCTCACTCACCTCGTCGAAGCCCTCGTGCGCCAGGGCCTCTGCGATGTCCATGTCTGCGTTCCTCAATCGGACAAATCGGTTTCGGGCCACTCCGTCACTCTTAGGGAAACCGTCGAGGCCTGTTCCGCCCAAATTGATGGTGCCACCGCTTTTGAAGTTTCAGGAACTCCTGTGGATTGTGTTTCACTAGCGTTGTCTGGAGCCTTGTTTTCGTGGTCAAAGCCTATGCTGGTTATTAGCGGGATTAACCGGGGATCAAGTTGTGGTCAGCTCATGTTCTACTCTGGTGTTGTTGCTGGAGCAAGAGAGGCGTTATTATGTGGTGTACCTTCATTGTCGATATCATTAAATTGGAAGAAGGATGAAAGTCAAGAGACTGATTTCAAGGATGCAGTAGAACTCTGTTTACCATTAATAAATGCTGCTATCAGGGATGTTGTAAAGGGAACTTTCCCCAAAAGCTGCTTTCTGAATATAGAAATTCCTACATCACCTTTAAGCAGCAAGGGCTTCAAATTGACCAAGCAAAGCATGTGGAGATCCACTCCAAATTGGCAAGCAGTTTCAACTAGCCGCTATCCTCCTGGTCATTTCTTGGCCAGTAAACAAGGCCTTGGTCTTCAGTTTGCACAGATTGGCCGGGATGCTTCTGCTGCTGGTGCAGCCCGTAAATTAACTACACAGAAAAAGAATTTGGAGATTGTCGAATCAATTGGAGCTGCAGGGAAACCTGATTCCAACAGGGTGAAGAAGTACTTCAGATTAGAGCAGTTTTTGGATAAGCAGCAGGAAGATACAGACGACGATCTGGATTACAGGGCACTTGAAAGTGGATTTGTTGCAGTTACTCCTCTCTCACTTTCTCCTCGTACCGAGACGGATATTGAAATGGCAGCTTCTGATTGGATTTCATCTGTGCTTCCTGGTGAACAATAG 1182 0.4645 MTTSSGSVKNAMPPNLEKVLLNRKHPEEEEEEEEEEEEEEGEESKSKAEPSQSSPSTEDAVADDSSKPIVLITNSDGIESPGLTHLVEALVRQGLCDVHVCVPQSDKSVSGHSVTLRETVEACSAQIDGATAFEVSGTPVDCVSLALSGALFSWSKPMLVISGINRGSSCGQLMFYSGVVAGAREALLCGVPSLSISLNWKKDESQETDFKDAVELCLPLINAAIRDVVKGTFPKSCFLNIEIPTSPLSSKGFKLTKQSMWRSTPNWQAVSTSRYPPGHFLASKQGLGLQFAQIGRDASAAGAARKLTTQKKNLEIVESIGAAGKPDSNRVKKYFRLEQFLDKQQEDTDDDLDYRALESGFVAVTPLSLSPRTETDIEMAASDWISSVLPGEQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00342 393 MobiDBLite consensus disorder prediction 28 43 - -
Cca11g00342 393 PANTHER 5'-NUCLEOTIDASE SURE-LIKE 13 393 - -
Cca11g00342 393 Hamap 5'/3'-nucleotidase SurE [surE]. 68 389 IPR030048 GO:0008252
Cca11g00342 393 SUPERFAMILY SurE-like 69 375 IPR036523 GO:0016787
Cca11g00342 393 PANTHER 5'-NUCLEOTIDASE SURE 13 393 IPR030048 GO:0008252
Cca11g00342 393 Coils Coil 18 49 - -
Cca11g00342 393 MobiDBLite consensus disorder prediction 1 65 - -
Cca11g00342 393 Pfam Survival protein SurE 70 262 IPR002828 GO:0016787
Cca11g00342 393 Gene3D - 70 389 IPR036523 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00342 Cca-Chr11 4427177 4433414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00342 K03787 - gmx:100776267 597.43