Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00340 ATGACTATCTCTACTATTTTCCTTTTGACTCTCTTTTCTGTGATTTATGGCAGTGGTGCCACGCATCACCTTTTCATAAATCTTCAGACTCTTTCTTCTGATTATTCCTCCAATCAACCTTACAGAACTGCCTATCACTTCCAACCCCCCAAGAATTGGATAAATGATCCCAATGGGCCATTGAGATATGGAGGACTTTATCACCTGTTCTACCAATACAACCCTAAAGGTGCAGTTTGGGGAAACATCGTGTGGGCCCATTCAGTGTCAAAGGATCTGGTGAACTGGGCCCCACTGGATCCTGCCATCTTTCCATCTCAACCGTCCGATATCAATGGTTGTTGGTCAGGATCAGCCACACTGCTTCATGGGAACAAACCCGTCATTTTGTACACTGGAATTGACCCAATGAACCACCAGGTCCAAAACCTGGCCCAGCCCAAAAACTTGTCTGATCCATTTCTCAGGGAATGGGTCAAGACCCCAAAAAATCCTCTAATGGCACCCACTAGTGCCAACAAGATCAATTCAAGTTCATTTAGGGACCCCACCACTGCTTGGCTAGGAAAAGATGGACATTGGAGAGTGCTTGTTGGGAGCAAGAGAAGGACTAGGGGAATGGCACTTTTGTATATAAGCAAAGATTTCTTTAATTGGGTTCAAGCCAAACACCCCTTGCATTCAACCCTAGGAAGTGGAATGTGGGAGTGCCCTGATTTTTTTCCTGTTTTGAATAGTGGCCAATTGGGTGTTGACACGTCAGTGAATGGTGATTATGTAAGCCACGTGCTTAAGGTCAGTTTGGATGACAAGAAACATGATTACTACATGATTGGGAGTTACAATGCTGCCAAGGATGTGTTTGTCCCGGATGAGGGGTTGAATAGTGAATTTGTTTTGAGATATGATTATGGGAAATACTATGCCTCAAAAACTTTCTTTGATGATGGGAAGAAGAGAAGGGTTTTGCTTGGGTGGGTCAACGAATCCTCTAGTGTTGCTGATGATATCAAGAAAGGATGGTCTGGAATTCACGCAATTCCAAGGGCTATCTGGCTGCATAAATCTGGTAAACAGTTGGTGCAGTGGCCAGTGGTGGAAATTGAAAAGCTGCGTGCAAATCCAGTCAACTTGGCACCCAAACTGATAAAAGGAGGCCAATTGGTTCAAATTAACGGTGTCACAGCAACACAGGCTGACGTTGAAATTTCATTTCAAGTGAGCAAGTTGGGAAAGGCTGAAGTCTTGGGCTATTTGACGGACCCCCAAATTCTGTGTAGCAAAAAGGGTTCAGCTGTTAAAAGTGGGCTGGGCCCATTTGGTCTTCTAGTTTTTGCTTCAGAGGGATTGCAAGAATACACATCAGTTTTCTTCAGAATATTCAGATACCAACACAAAAATTTGGTGCTGTTGTGCAGTGACCAAAGCAGGTCTTCCTTAAACAAAAACAATGATTTGACCACTTATGGAACTTTTGTGGACGTGGACCCTCTTCACGAGAAGCTATCATTGAGAACCTTGATTGATCATTCTGTAGTAGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCCAGAGTTTATCCCACATTGGCAATCAATGATAAAGCAAAAATTTATGCTTTCAATAATGGCACTTCTGATGTCAACATCTCAAGACTAAGTGCTTGGAGCATGAAGAAAGCACACATACATTGA 1701 0.4339 MTISTIFLLTLFSVIYGSGATHHLFINLQTLSSDYSSNQPYRTAYHFQPPKNWINDPNGPLRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWAPLDPAIFPSQPSDINGCWSGSATLLHGNKPVILYTGIDPMNHQVQNLAQPKNLSDPFLREWVKTPKNPLMAPTSANKINSSSFRDPTTAWLGKDGHWRVLVGSKRRTRGMALLYISKDFFNWVQAKHPLHSTLGSGMWECPDFFPVLNSGQLGVDTSVNGDYVSHVLKVSLDDKKHDYYMIGSYNAAKDVFVPDEGLNSEFVLRYDYGKYYASKTFFDDGKKRRVLLGWVNESSSVADDIKKGWSGIHAIPRAIWLHKSGKQLVQWPVVEIEKLRANPVNLAPKLIKGGQLVQINGVTATQADVEISFQVSKLGKAEVLGYLTDPQILCSKKGSAVKSGLGPFGLLVFASEGLQEYTSVFFRIFRYQHKNLVLLCSDQSRSSLNKNNDLTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTLAINDKAKIYAFNNGTSDVNISRLSAWSMKKAHIH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00340 566 CDD GH32_Fruct1-like 52 353 - -
Cca11g00340 566 ProSitePatterns Glycosyl hydrolases family 32 active site. 46 59 IPR018053 GO:0004553|GO:0005975
Cca11g00340 566 PANTHER CELL-WALL INVERTASE 2 565 - -
Cca11g00340 566 Gene3D - 375 560 - -
Cca11g00340 566 Pfam Glycosyl hydrolases family 32 C terminal 367 559 IPR013189 -
Cca11g00340 566 Pfam Glycosyl hydrolases family 32 N-terminal domain 46 364 IPR013148 -
Cca11g00340 566 SUPERFAMILY Arabinanase/levansucrase/invertase 36 365 IPR023296 -
Cca11g00340 566 Gene3D Glycosyl hydrolase domain; family 43 50 374 IPR023296 -
Cca11g00340 566 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 565 - -
Cca11g00340 566 SMART glyco_32 46 520 IPR001362 GO:0004553|GO:0005975
Cca11g00340 566 SUPERFAMILY Concanavalin A-like lectins/glucanases 364 563 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00340 Cca-Chr11 4414017 4419313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00340 63 565 Glycoside Hydrolase AT3G13790 64.258 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00340 K01193 - gmx:100777339 1043.11