Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00336 ATGATTGGCAGCTTCAACCAGACTGATTCAATGGAGTGCTGTGAAGCTGGAATAGAGAAAGTTGATTCCCAGGAATCTGGTCCTGTCTTGAAGAAGTCAAAGACCGAAACCTTGGCTTCTCAAGATGTAGATAATTGTGAAATGGCAGAAGGTGAGGACAGACTTAGCGACATGCCGGATTGTCTTATCCATCATATTTTGTCATTCATGGAAACAAAAGATGCTATTCAAACTTGTGTTTTATCGAAGAGGTGGAGGTATCTTTGGGCTTCAGTTCCCTGCCTGAACTTTACCAGCAAACCATTCCTGCGGTTGGTTGATTTCAAGAAGTTTGTGCTGTGGGTCCTAAACCATCGTGAAGTTTCTCATGTCAAAGTTCTTATTTACTATCGATTTGGGGTGGATTATGCGACGGATCAAAATTTATTGAATAAGGTTATTGAGTATGCAACATGTCATGGGGTTGAAGAAATCAAAATCAATCTACGGGCAAAAACATCTGGCAGTCCTCCTGTTGAAATTCCTTTGGCTCTATTTACTTGCCCATCTTTGAAAAAGCTTGAGTTAAAAGATTGTCATCCGACAAATGTGTCATCCCCTATAGGTTGCAAATCATTGGACATGTTGCATCTGGAACAGTTTCCAATGTATCCTGTTACATCTGACTTTTCAAATCCATTTGCAAGTTTGGCAGAACTTTTTGGTTTTACTACATTGACAACTTTGCATCTCAATAGCTTCACTCTGTGTTATACAGGATTTGACTGTCTGGATCCATTTGCTAATTGTGTCCATTTGAAGACTTTGCACTTAAGTGAAATGTCCTTTAAGTCAGATTTGAACCCTAAAGATTTTGTGATATCTGCCCCTAAACTCAGTAACTTGAATCTAGTGTGCAACCGCTTCAAATGCAAGATTGTAGTTGCTGCACCACAGCTTTCCAATTTTACTTACTTGTATTCTACACCTTGTGCCTTCTTTGAGTTTTGTCTTCCTTCTTATGATGGCTTAATCATTGATATCCATGAACCACACGATCGAGTGGAAAAATGTCGTCCAAGGAAAATAGAGGAGACTTTACATGGTTTGATCAGTATGTCACGGGGATGTCATAGTGCAGAAGCTGTTAAACTATCCTTCTGTACAGTAAAGGTTACTTGTGGACATGCAACCCTGTTAAAGCCAGAACCATGCAGACTTCGAGATTATGACTGTCTAAAAGGATACTTGCCAAAGGAGGTTTGTTTCAAGCAGAGATGGAAGTCAACCCCAATACTTGGATCCTTATGA 1290 0.3984 MIGSFNQTDSMECCEAGIEKVDSQESGPVLKKSKTETLASQDVDNCEMAEGEDRLSDMPDCLIHHILSFMETKDAIQTCVLSKRWRYLWASVPCLNFTSKPFLRLVDFKKFVLWVLNHREVSHVKVLIYYRFGVDYATDQNLLNKVIEYATCHGVEEIKINLRAKTSGSPPVEIPLALFTCPSLKKLELKDCHPTNVSSPIGCKSLDMLHLEQFPMYPVTSDFSNPFASLAELFGFTTLTTLHLNSFTLCYTGFDCLDPFANCVHLKTLHLSEMSFKSDLNPKDFVISAPKLSNLNLVCNRFKCKIVVAAPQLSNFTYLYSTPCAFFEFCLPSYDGLIIDIHEPHDRVEKCRPRKIEETLHGLISMSRGCHSAEAVKLSFCTVKVTCGHATLLKPEPCRLRDYDCLKGYLPKEVCFKQRWKSTPILGSL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00336 429 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Cca11g00336 429 Pfam F-box domain 55 92 IPR001810 GO:0005515
Cca11g00336 429 SUPERFAMILY L domain-like 174 324 - -
Cca11g00336 429 PANTHER F-BOX PROTEIN-LIKE 39 397 - -
Cca11g00336 429 SUPERFAMILY F-box domain 51 107 IPR036047 GO:0005515
Cca11g00336 429 Gene3D Ribonuclease Inhibitor 140 323 IPR032675 -
Cca11g00336 429 Gene3D - 41 95 - -
Cca11g00336 429 SMART fbox_2 58 97 IPR001810 GO:0005515
Cca11g00336 429 PANTHER CYCLIN-LIKE F-BOX 39 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00336 Cca-Chr11 4354049 4359888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00336 53 216 EF-hand Containing Proteins AT5G41840 30.811 6.08e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00336 - - vun:114167379 706.057