Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00334 ATGGTGGTTGCGTCCATtcgtcttcttccttctccactcctctctttcgctcctcgtcgctcttcctattcATGGCGTTGCCGTCCCTCTTCCATCCACTCCAGTTCTACTAAGGGAGTGGAATTAGGTGGTGATCAAGCGGAACTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTTAGCTGCTTGACTAATCCTTTGAACAAATGTGAGGTTTGTTCAAAAGCTGCCCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCGTCCTCATTCGATACCCCAATTCCTCAGGAACACAGAATATTCTTATAGATGCTGGAAAGTTTTTCTATCAAAGTGCTCTCCGGTGGTTTCCTGCTTTTGGGATAAGAACACTTGATGCGGTCATTATTACTCATTCTCATGCTGATGCAATTGGAGATTGGACAACCAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCCGGTGCCAAAGTGTCAGAGTTGCAATTCAATATCATATCGGAAAAACCATTTTTTGTACATGGATTGAAGATTACCCCATTACCAGTGTGGCACGGCCAGGATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGTGAAATTCCGGAAGAAACTTATCCACTTTTAAAGGACTGTGAAATTCTGATCATGGATGCTTTGAGGCCTGATCGCTCTACTTCCACACATTTTGGACTTCCAAGGGCGTTGGAGGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACTGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTACCTTAAGAAACTATCGGAGTCTGAGGGCCTTGATGCACAACTGAGTTATGATGGCCTTCGATTGAACTTGGCTTGGGAATTGCACTATAAGGATGTGGTGTGTGTCTCGGATTCTTTGCATGCACTTCAATTGATCAAGCAACCAACCATCATATCTCACGCATTTGTTACACTTATTGAATCCATTAAAGATTTTGTAAAAGAAGACTGGAAGGTGGAGTTTATGCCCACATTGCGGGAAGGGAATAAGTGTGCTGATATTCTTGCCAAGAAAGAACCCATAACAAATAGGCATTTGATTGTGTTTGAAGAACCTCCGTCTATTTTGATGGATGCTCTTTGGAATGATAGAGATCACATGTCTTTCTTGAGAATTTAA 1272 0.3947 MVVASIRLLPSPLLSFAPRRSSYSWRCRPSSIHSSSTKGVELGGDQAELIFLGTGTSEGVPRVSCLTNPLNKCEVCSKAAQPGNKNRRLNTSVLIRYPNSSGTQNILIDAGKFFYQSALRWFPAFGIRTLDAVIITHSHADAIGDWTTNVQPHIPIYVAKRDFEVMKKTHYYLVDTSVILPGAKVSELQFNIISEKPFFVHGLKITPLPVWHGQDYRSLGFRFGNICYISDVSEIPEETYPLLKDCEILIMDALRPDRSTSTHFGLPRALEEVRKIQPKRTLFTGMMHLMDHEEVNDYLKKLSESEGLDAQLSYDGLRLNLAWELHYKDVVCVSDSLHALQLIKQPTIISHAFVTLIESIKDFVKEDWKVEFMPTLREGNKCADILAKKEPITNRHLIVFEEPPSILMDALWNDRDHMSFLRI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00334 423 PANTHER HYDROLASE C777.06C-RELATED-RELATED 32 321 - -
Cca11g00334 423 SMART Lactamase_B_5a 89 286 IPR001279 -
Cca11g00334 423 Gene3D - 43 322 IPR036866 -
Cca11g00334 423 CDD metallo-hydrolase-like_MBL-fold 48 253 - -
Cca11g00334 423 CDD RNase_H_like 319 388 IPR044730 -
Cca11g00334 423 Pfam Reverse transcriptase-like 319 389 IPR002156 GO:0003676|GO:0004523
Cca11g00334 423 PANTHER OS09G0363800 PROTEIN 32 321 - -
Cca11g00334 423 SUPERFAMILY Metallo-hydrolase/oxidoreductase 48 321 IPR036866 -
Cca11g00334 423 Pfam Beta-lactamase superfamily domain 105 284 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00334 Cca-Chr11 4332839 4340568 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00334 - - gmx:100786919 573.933