Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00331 ATGTATCGATTAGCTCGTAAAGTAGCTTCTTCCTCCGCCAAGAACATCGTAAATGGTGGGGTATTGTTAACCAGAAATTATGTTACCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGGCATCCTTCAAGGTGTAACTCAGGTTGCTGATGCTGTCAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGTCGTGGGAACCCAAGGATCACCAAGGACGGGGTGACTGTGGCCAAAAGTATCAAATTTAAAGACAAAGCCAAAAATGTTGGTGCGGATCTTGTGAAGCAGGTGGCCAAGGCTACCAACACTGCTGCCGGAGACGGTACCACTTGTGCAACTGTTTTAACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCGGCCGGAGTAAATGTTATGGATTTACGGAATGGAATAAATAAGGCAGTTGATGCTGTAATTACCGACTTGAAAAGCAGAGCATTAATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTTATTACTGTTGCTGATGGGAATACTTTGGATAATGAGTTGGAAGTCGTAGAAGGAATGAAGTTAACCAGAGGCTATATATCTCCATATTTTATTACTGATCAGAAGACCCGGAAATGTGAATTGGAGAACCCACTTATTCTCATACATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAATATTGGAGCTGTCCGTAACGAAAAAAAGGCCACTCCTAGTTGTTGCTGAAGATGTTGAGAGTGATGCATTGGCCATGCTCATACTCAACAAGCATCACGCTGGACTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAGTAGAAGAGCAAATCTAGATGATCTTGCAATTCTTACTGGAGGAGAGATTATGATGAATTTGAAAACAGGTGAAGAGCGTGGTTTGTTTCTAGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACAGTCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGCTCATTGAAGAGAGATGTGAACAGCTGAGGGCAGCTATGGACAAGAGTTCTGCCGTGTTTGATAAAGAAAAAGCACAGGAACGTCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTAGCAAAGTCTTGGATAACCTTCAAACTCAAAATGAAGATGAGAAAAGAGGAGTACAAATTATTCAGAACGCACTCAAGGCGCCTACCTTTACAATAGTTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATTGTAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTGAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACGACAACCGAGGCAGCTGTGGTGGAAAATCCGAATGACAAAAATAAACCTCCCAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1728 0.4253 MYRLARKVASSSAKNIVNGGVLLTRNYVTKDINFGVGARAGILQGVTQVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPLILIHDKKISDMNSLLKILELSVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDSRRANLDDLAILTGGEIMMNLKTGEERGLFLDKVQPEMLGTAKKVTVTIDDTIILHGGGDKKLIEERCEQLRAAMDKSSAVFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYASKVLDNLQTQNEDEKRGVQIIQNALKAPTFTIVSNAGFDGALVHSKLLEQDDCNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVENPNDKNKPPSRVPDMDDLDL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00331 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Cca11g00331 575 PRINTS 60kDa chaperonin signature 294 317 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 PRINTS 60kDa chaperonin signature 109 136 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 PRINTS 60kDa chaperonin signature 53 79 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 TIGRFAM GroEL: chaperonin GroL 30 558 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 Gene3D GroEL 218 404 IPR027409 -
Cca11g00331 575 Gene3D - 163 441 IPR027410 -
Cca11g00331 575 SUPERFAMILY GroEL equatorial domain-like 33 553 IPR027413 -
Cca11g00331 575 SUPERFAMILY GroEL-intermediate domain like 164 230 IPR027410 -
Cca11g00331 575 MobiDBLite consensus disorder prediction 555 575 - -
Cca11g00331 575 Coils Coil 457 477 - -
Cca11g00331 575 SUPERFAMILY GroEL apical domain-like 210 407 IPR027409 -
Cca11g00331 575 Hamap Chaperonin GroEL [groEL]. 28 573 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 Pfam TCP-1/cpn60 chaperonin family 49 555 IPR002423 GO:0005524
Cca11g00331 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 19 567 - -
Cca11g00331 575 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 19 567 - -
Cca11g00331 575 CDD GroEL 30 555 IPR001844 GO:0042026|GO:0140662
Cca11g00331 575 Gene3D - 32 554 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00331 Cca-Chr11 4292363 4298462 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00331 K04077 - gmx:100778935 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00331 11 4292363 4298462 Cca11g00331 11 4292363 4298462 ECH