Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00315 ATGGAGTTCTCAGTGGCGCGTTTATCTCTGGCTCTGAGATCGAGTTTGACGTTCGGAGAGGCGCTATGCGCGGTCTTCATTCCGCTTATTGGAATCGTGGAAGCTGTTTTCTTCACCTTAGCTGGTTGCTTCGATCTTCATTCTCCCAATAACAACAATCCCTCTTTTTCCTTCCACCACGTTCTCACCCTCGCCAATCAATCTCCATTTTCTGTTAATGAAATTGAGGCGTTGCATGACTTGTTCAAGAAGTTGAGTAGTTCAATCATTGATGATGGCCTCATCCACAAGGAAGAGCTCACATTGGCAATGTTGAAGACCACAACTGGCGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTCGATGAAAAAAAGAATGGCGTAATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTATACTCCTCTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTATCTGAATGTGGCATGGATCTGGAAGATGAAGCCCTTGATACCATTATTGATAAGACATTTCAAGATGCTGATACTGACAAGGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTTATTCGACACCCAACACTCTTGAAGCACATGACTCTACCTCACCTAAAGGACATCACCACACTTTTTACCAGTTTCATTTTCAGCACCCAAGTTGATGATTCCCACTGGCATATTAATGGCAGTCATAAACATTGA 795 0.4138 MEFSVARLSLALRSSLTFGEALCAVFIPLIGIVEAVFFTLAGCFDLHSPNNNNPSFSFHHVLTLANQSPFSVNEIEALHDLFKKLSSSIIDDGLIHKEELTLAMLKTTTGENLFLDRVFDVFDEKKNGVIEFEEFVHALSIFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLEDEALDTIIDKTFQDADTDKDDKISKEEWKAFVIRHPTLLKHMTLPHLKDITTLFTSFIFSTQVDDSHWHINGSHKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00315 264 SMART efh_1 114 142 IPR002048 GO:0005509
Cca11g00315 264 SMART efh_1 151 179 IPR002048 GO:0005509
Cca11g00315 264 SMART efh_1 195 223 IPR002048 GO:0005509
Cca11g00315 264 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Cca11g00315 264 ProSiteProfiles EF-hand calcium-binding domain profile. 191 226 IPR002048 GO:0005509
Cca11g00315 264 CDD EFh 151 220 IPR002048 GO:0005509
Cca11g00315 264 Gene3D - 62 254 - -
Cca11g00315 264 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Cca11g00315 264 Pfam EF hand 115 135 IPR002048 GO:0005509
Cca11g00315 264 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Cca11g00315 264 PRINTS Recoverin family signature 118 139 - -
Cca11g00315 264 PRINTS Recoverin family signature 165 183 - -
Cca11g00315 264 PRINTS Recoverin family signature 211 231 - -
Cca11g00315 264 Pfam EF-hand domain pair 150 219 IPR002048 GO:0005509
Cca11g00315 264 PANTHER CALCINEURIN B 10 253 IPR045198 GO:0005509|GO:0019722|GO:0019900
Cca11g00315 264 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 10 253 - -
Cca11g00315 264 CDD EFh 115 176 IPR002048 GO:0005509
Cca11g00315 264 SUPERFAMILY EF-hand 64 244 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00315 Cca-Chr11 4039250 4042696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00315 39 254 EF-hand Containing Proteins AT5G55990 56.818 4.06e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00315 K06268 - gmx:100801943 431.024