Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00311 ATGGCTCAGCCGGCATTCGATCCGTACTACTTGTATCAACAGGATGAACGGAGCAACATCAACACGCTCTTCGTGTCTGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCATTCGCCACGTTTTTCAACCATCAATCAGCAATGGCAGCGTTGCACGCTTTGAATGGTGTGAAATTTGATCCTCAAAGTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGAAAACCAGGTGGTGGACCCTACGTGGTTATAGATAAAAGGTCCAAAGGGGAGCCTGATCTTCAGGGATCATCAAGTGATGATGATGGTGAGAGTGACCCTGATGAACCAACCGAAAGTGGTGGCAACCATGGTGATCCAGCAACCCTGCAAAGTGGTGAAACTGCTGTTGGTTCTGAAAATGCTGTACCTGTGGAGCAATATGAAAAGGGCAGTGATGGAGGACTGTGTTCCACTCTCTTTATTGCAAATCTTGGTCCAACCTGCACCGAAGATGAACTAAAGCAAGCTTTCTCTGTATATACTGGATTCAACATGGTCAAAATGCGTTCCAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCTTGGAGGAGCTTCAGGGCAGCTTGTTGCCATCATCAGATCGGGGTGGCATGCACATAGAATATGCGAGGTCTAAAATGAGGAAGCATTAG 798 0.49 MAQPAFDPYYLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQSGSVLHIELARSNSRRKRKPGGGPYVVIDKRSKGEPDLQGSSSDDDGESDPDEPTESGGNHGDPATLQSGETAVGSENAVPVEQYEKGSDGGLCSTLFIANLGPTCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFADFEEIDQAAKVLEELQGSLLPSSDRGGMHIEYARSKMRKH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00311 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 254 - -
Cca11g00311 265 SUPERFAMILY RNA-binding domain, RBD 21 245 IPR035979 GO:0003676
Cca11g00311 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Cca11g00311 265 Gene3D - 16 103 IPR012677 -
Cca11g00311 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Cca11g00311 265 CDD RRM_RBPMS_like 21 96 - -
Cca11g00311 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Cca11g00311 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Cca11g00311 265 MobiDBLite consensus disorder prediction 99 158 - -
Cca11g00311 265 PANTHER RNA-BINDING PROTEIN-RELATED 11 254 - -
Cca11g00311 265 Gene3D - 181 265 IPR012677 -
Cca11g00311 265 CDD RRM_scw1_like 182 259 - -
Cca11g00311 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Cca11g00311 265 SMART rrm1_1 22 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00311 Cca-Chr11 3996477 4000574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00311 - - gmx:100783764 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00311 11 3996477 4000574 Cca11g00311 11 3996477 4000574 ECH