Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00303 ATGGCATGTTTGGGAAGAACAACAGATAACTTCTCACGCATTTGCCTTGGAGATTTCAGTTTGACTTCCTTTTCCACCCAAAGGTGCATTATAGACATTGTCAACATTTTTTTTCTGGGTGTCTTTTATGCATCCTTGCTCACCAATCTGATCAAGAAAAGCCCTGATTGTGTCATGACTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCACAAGTTGATAAAATCCTGGTAGTGGAAGGAGGTAAAATCACTCAATCGGGTAGTTATGAAGATCTGCTGACAGCTGGAACAGCCTTTGAACAGCTCTTGAGTGCTCATAGAGAGGCAATTACAGGGATAGAAAAAAGCGGTGCAAACAAAAGAGAATTTGAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATGTTTTTAATCTCGCTAAAGGTGGAAGTGATGGGGACATTTCTACCAAGGTTCAACTTACACAAGAAGAAGAAAAGGAGATTGGTGATGTTGGATGGAAGCCTTTTTGTGACTATATTTTGTTCCCCAAGGGATCTTTGTTTCTATGTTTGAGCGTATTAGGACAGTTGGCTTTTGTAGGTTTGCAGGCTGCATCAACTTATTGGCTTGCTCTAGCCAGTGAAATCTCAGAAGTAACTAGCAGCATCTTAATTGGAGTTTATAGTGTGATATCTTTTTTAAGCATTATCTTTGTATATTTGAGGTCTTACTTTGCTGCACATCTTGGTTTAAAAGCTTCTAAAGCCTTCTTCTGTGCCTTCACTGATGCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTGACCCGAGCTTCGTCAGATTTGAGTATTTTAGATTTTGATATCCCTTTTACCACCATTTCCGTAACAGCTGAAGTAACTGAACTTCTGACTATGATTGGGATAATGGTTTCTATCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCTATGGTGGCTTCAAAATATATTCAGGGCTATTATCAAGCTTCTGCAAGAGAAATTATACGAATCAATGGAACTACCAAAGCTCCTCTTATGAATTTTACTGCTGAGACATCACTTGGTGTGGTTACTATAAGAGCTTTCAACATAGCTGACAGATTTTTCAAAAACTACCTTAACCTAGTTGATACAGATGCCACGATGTTCTTTCATTCTAATGCTGCCATTGAATGGTTAATTTTATGGGTTGAAGTACTTCAGAATTTGACACTCTTCACTGCAGCTTTGCTTCTTGTTCTACTTCCAAAGGGATATGTGGCCCCCGGCCTTGTGGGACTTTCTCTGTCTTATGCTTTTTCTTTGACAGCAACCCAAGTTCACCTGACTCGAATGTTTTGCAACTTATCAAACTATGTGATCTCGGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTATTGCAATTGTAGAGGACAATAGACCACCAGCTTCTTGGCCTTCCAAGGGTCGAATAGATCTCCAATCTCTAGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTTAAGGGCATCTCTTGTACGTTTAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTAGTAGAGGTGACATTCTTATAGACGGGATTAATATATGCTCAATAGGGCTAAAAGATTTGAGATCAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAACAACTTGGACCCTCTAGCCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGCAATAATTAGTAGTCTACCAAATCTCTTGGACACTTCTGTGAGTGATGAAGGTGACAACTGGAGTGTGGGGCAGCGCCAACTCATATGTCTAGGAAGAGTACTTCTTAAGAAAAACATAATTCTTGTTCTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATGTTATTCTACAACGAGTCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAACTGGTTGAGTATGACAAGCCTTCAAAGCTTATTGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAACTGTCATACGAATTTGCTTCAAAAAGATTAG 2259 0.3962 MACLGRTTDNFSRICLGDFSLTSFSTQRCIIDIVNIFFLGVFYASLLTNLIKKSPDCVMTALRRKTVILVTHQVEFLSQVDKILVVEGGKITQSGSYEDLLTAGTAFEQLLSAHREAITGIEKSGANKREFENVVTVQPEDSHVFNLAKGGSDGDISTKVQLTQEEEKEIGDVGWKPFCDYILFPKGSLFLCLSVLGQLAFVGLQAASTYWLALASEISEVTSSILIGVYSVISFLSIIFVYLRSYFAAHLGLKASKAFFCAFTDAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPFTTISVTAEVTELLTMIGIMVSITWQVLIVAVLAMVASKYIQGYYQASAREIIRINGTTKAPLMNFTAETSLGVVTIRAFNIADRFFKNYLNLVDTDATMFFHSNAAIEWLILWVEVLQNLTLFTAALLLVLLPKGYVAPGLVGLSLSYAFSLTATQVHLTRMFCNLSNYVISVERIKQFIHIPAEPIAIVEDNRPPASWPSKGRIDLQSLEIRYRPNAPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICSIGLKDLRSKLSIIPQEPTLFKGSIRNNLDPLALYSDDEIWKALEKCQLKAIISSLPNLLDTSVSDEGDNWSVGQRQLICLGRVLLKKNIILVLDEATASIDSATDVILQRVIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDKPSKLIDTNSSFSKLVAEYWSNCHTNLLQKD 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00303 752 CDD ABC_6TM_ABCC_D2 187 480 IPR044726 GO:0140359
Cca11g00303 752 Pfam ABC transporter transmembrane region 220 448 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00303 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 112 IPR027417 -
Cca11g00303 752 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 56 741 - -
Cca11g00303 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 738 IPR027417 -
Cca11g00303 752 Gene3D - 488 739 IPR027417 -
Cca11g00303 752 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 193 468 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00303 752 Gene3D ABC transporter type 1, transmembrane domain 156 485 IPR036640 GO:0005524|GO:0016021
Cca11g00303 752 SUPERFAMILY ABC transporter transmembrane region 187 485 IPR036640 GO:0005524|GO:0016021
Cca11g00303 752 SMART AAA_5 531 724 IPR003593 -
Cca11g00303 752 CDD ABCC_MRP_domain2 503 723 - -
Cca11g00303 752 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 56 741 - -
Cca11g00303 752 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 507 739 IPR003439 GO:0005524
Cca11g00303 752 Pfam ABC transporter 522 670 IPR003439 GO:0005524
Cca11g00303 752 Gene3D - 44 136 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00303 Cca-Chr11 3844394 3854665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00303 503 737 Calmodulin-binding Proteins AT2G36910 31.667 2.14e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00303 - - ccaj:109808610 1328.92