Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00297 ATGATTACAGTAAGTGTAAAATGGCAAAAGGAGATTTTCAAAGATGTAGAAATTGACACTACACAGTCCCCTTTTGTTTTTAAATGCCAATTGTATGATCTGACTGGTGTTCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCCGATTGGTCAAAATTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCCGATGAAGTTATAAAGACTCCAGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTAGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAATACATGTTATATGAACTCAACATTGCAATGCCTCCATTCTGTGCCCGAGTTAAAGTCAGCTTTGATTAAGTACTCAAATTCAGGACGAAACAATGATGTCGATCAGCCTTCTCATATGTTGACCATTGCAACCCGTGACATATTCAATGAACTTGATAAAAGTGTCAAGCCTGTGGCACCAATGCAATTTTGGATGTTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACTCTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAACCCCGATGCTGTGAAGGCCCTTTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCGGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCATGAAGGGCTAAAACATGGGTTAAAATCAGAGTTAGAAAAGGCTTCACCTGTGTTGGGCCGTAGTGCTACCTACTTGAAGGAATCACGCATAAATGCCCTGCCAAGGTACCTAACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAGTCCAACCAGAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTGTATGATTTTTGTTCAGATGATCTCCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGGAACGAGGAAGGCAAGAAGCTTGGTCTGAAAGTAAATGAGAAAAGCTCTGTTCAGAAGGAAAATGATGTAAAAATGGCCGATGTTGAGGGATCATCGAATGGAGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCTAAAGTAGAAGAGGACATCACTAGACTATCTGGAGGAGGTGATTGGCATATGGCTTATATAATCATGTACAAGGCTCGTGTTGTATCTGTTTAA 1443 0.4103 MITVSVKWQKEIFKDVEIDTTQSPFVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSKLGVKEGQKLMMMGTADEVIKTPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIKYSNSGRNNDVDQPSHMLTIATRDIFNELDKSVKPVAPMQFWMLLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASPVLGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLEAPRQILRNEEGKKLGLKVNEKSSVQKENDVKMADVEGSSNGGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKVEEDITRLSGGGDWHMAYIIMYKARVVSV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00297 480 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 479 - -
Cca11g00297 480 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 479 IPR044635 GO:0004843|GO:0016579|GO:0043161
Cca11g00297 480 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 476 IPR028889 -
Cca11g00297 480 SUPERFAMILY Cysteine proteinases 102 474 IPR038765 -
Cca11g00297 480 SMART ubq_7 2 73 IPR000626 GO:0005515
Cca11g00297 480 CDD Peptidase_C19A 105 474 - -
Cca11g00297 480 Gene3D - 1 73 - -
Cca11g00297 480 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Cca11g00297 480 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 411 429 IPR018200 GO:0004843|GO:0006511
Cca11g00297 480 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Cca11g00297 480 CDD Ubl_USP14_like 1 75 - -
Cca11g00297 480 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Cca11g00297 480 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Cca11g00297 480 Pfam Ubiquitin carboxyl-terminal hydrolase 105 473 IPR001394 GO:0004843|GO:0016579
Cca11g00297 480 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Cca11g00297 480 Gene3D Cysteine proteinases 98 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00297 Cca-Chr11 3714425 3726212 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00297 K11843 - gmx:100802120 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00297 11 3714425 3726212 Cca11g00297 11 3714425 3726212 ECH